LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g1528	ATGAGGGTGCTCTCTTCTTTTTGCGGACACATTCTAGGAGGGGGGAGCTTCAAGAGGAGACTGAGCTACCTTGACAACTCCCAAACCGCTACATCTAACCTCAGCAATATTGGAATCCGAGCTCATTTTTGGTGTGATGCTTGGCCAAGCCGAGAGAGGAGGAATAATGATCAATGGAGAGAGAAATATGTAGAAAGCCTTGCAGCTTTAGGAAGTAGCTACTGGAAACTAGACAACATTCTTGAGCCTTTAAGCATCAATGTTGTAGCCTTTGAGAAGCCTTTGTGTAAGCTCACATTTCGTCATCTTCTTAAAGCTACCAATGGTTTCAGTGCTCAGAGCTTGATAGGGTCTGGATGGTTTGGTGAAGTGTACAAAGCTAAGCCCAAAGATGGGTGTGTCGTAGCTATCAAGATGCTCATTTACATTATAGGTTGTCAGGGAGAGAGGGAGTTCATGGCAGAAATGGAAACTTTAGGAAAGATCAAGCATCGAAACCTCGTCACTTCTCTAGGTTACTGTGGTGTGACATCGATGGCATCATTCTTGGAGAAGGTTTTCCCAGAAGTGTATAGAAAGATGAAGGAAGACATGAAGATTAGCAACTACTGCAAGTTTGATAGCCAACTCTTAACATCATTTACTTCATCACTCTACATAGCTGGCCTTGAGGCTTACTTCTTTGCCTCATCAGTTACAGCAACCTTTGGCCGCAAACCGTTGATCCTCGTAGGTGGTGCTGCGTTTTTTATCTGGGCAATTCTCGGTGTTGTTGCTTCCAACATTGTCATGCTCATGCTTGGTCGAGTTCTGCTTGGAGTTGGGGTTGGCTTTGCAAATCAATCAGTCCCACTATACCTCTCTGAAATGGCACCACCAACATATAGAGGAGTAATCAACAATGGCTTTCAACTTTGTGTTGGCATTGGAGCTCTATCAGCTAATCTGATTAATTATGGCATAGAAAAGATCAAAGGAGGATGGGGATGGCGTATTTCTTTAGCCATGGCAGCAGTTCCAGCCTCAATGCTCACTCTAGGCTCATTTTCCAGAAACACCCAATAG	1065	0.4413	MRVLSSFCGHILGGGSFKRRLSYLDNSQTATSNLSNIGIRAHFWCDAWPSRERRNNDQWREKYVESLAALGSSYWKLDNILEPLSINVVAFEKPLCKLTFRHLLKATNGFSAQSLIGSGWFGEVYKAKPKDGCVVAIKMLIYIIGCQGEREFMAEMETLGKIKHRNLVTSLGYCGVTSMASFLEKVFPEVYRKMKEDMKISNYCKFDSQLLTSFTSSLYIAGLEAYFFASSVTATFGRKPLILVGGAAFFIWAILGVVASNIVMLMLGRVLLGVGVGFANQSVPLYLSEMAPPTYRGVINNGFQLCVGIGALSANLINYGIEKIKGGWGWRISLAMAAVPASMLTLGSFSRNTQ	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g1528	354	PANTHER	SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER	172	349	IPR045262	GO:0015144
	Dere07g1528	354	ProSitePatterns	Sugar transport proteins signature 2.	271	296	IPR005829	GO:0016020\|GO:0022857\|GO:0055085
	Dere07g1528	354	ProSitePatterns	Protein kinases ATP-binding region signature.	116	138	IPR017441	GO:0005524
	Dere07g1528	354	Pfam	Sugar (and other) transporter	178	348	IPR005828	GO:0016020\|GO:0022857\|GO:0055085
	Dere07g1528	354	Gene3D	Phosphorylase Kinase; domain 1	99	169	-	-
	Dere07g1528	354	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	165	354	IPR020846	GO:0022857
	Dere07g1528	354	Gene3D	MFS general substrate transporter like domains	170	350	IPR036259	-
	Dere07g1528	354	SUPERFAMILY	Protein kinase-like (PK-like)	96	178	IPR011009	-
	Dere07g1528	354	FunFam	serine/threonine-protein kinase BRI1-like 2	71	183	-	-
	Dere07g1528	354	Pfam	Protein tyrosine and serine/threonine kinase	113	175	IPR001245	GO:0004672\|GO:0006468
	Dere07g1528	354	SUPERFAMILY	MFS general substrate transporter	203	346	IPR036259	-
	Dere07g1528	354	ProSiteProfiles	Protein kinase domain profile.	110	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g1528	Dere-ChrDere07	20642799	20650352	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g1528	178	349	Organic Solute Cotransporters	AT5G61520	62.147	5.64e-65	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-Xb-1	Dere07g1528		Sugar_tr	1.3e-30	CL0015