Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1501 ATGTTAGGCGGTGATAATCCACAGTTTAACAGTTACGATTCTATAGCAATGGCTTCAGAGAAGAAATTGTCGAACCCAATGAGGGAAATCAAGGTTCAGAAGCTCGTTCTCAACATCTCAGTGGGTGAGAGTGGAGATCGTCTCACTCGAGCTGCCAAGGTGTTGGAGCAACTTAGTGGCCAAACCCCAGTGTTCTCCAAAGCAAGGTACACTGTTCGTTCGTTTGGGATTAGAAGGAATGAAAAAATTGCATGCTATGTCACTGTTAGAGGTGACAAGGCAATGCAACTTTTGGAGAGTGGTTTGAAGGTGAAGGAATATGAACTTCTGAGAAGAAACTTTAGTGATACTGGGTGTTTTGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGCATCTATGGTATGGACTTCTATGTTGTACTGGAACGCGCTGGTTATCGTGTCGGGCGTCGTCGTAGGTGCAAGTCTCGTGTTGGCATTCAGCATCGCGTCACGAAGGAGGATTCGATGAAGTGGTTTCAGGTGAAATATGAAGGTGTCATCCTTAACAAAGCCCAAACTATTGTTGGTTAG 597 0.4456 MLGGDNPQFNSYDSIAMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVGRRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKAQTIVG 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1501 198 FunFam 60S ribosomal protein L11 17 190 - -
Dere07g1501 198 Pfam Ribosomal protein L5 25 78 IPR031310 -
Dere07g1501 198 ProSitePatterns Ribosomal protein L5 signature. 55 71 IPR020929 GO:0003735|GO:0005840|GO:0006412
Dere07g1501 198 Pfam ribosomal L5P family C-terminus 82 180 IPR031309 -
Dere07g1501 198 SUPERFAMILY RL5-like 24 189 IPR022803 -
Dere07g1501 198 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 18 192 IPR002132 GO:0003735|GO:0005840|GO:0006412
Dere07g1501 198 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 5 188 IPR002132 GO:0003735|GO:0005840|GO:0006412
Dere07g1501 198 Gene3D - 17 193 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1501 Dere-ChrDere07 19943630 19946790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1501 17 198 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 93.956 3.65e-128 356