Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1490 ATGGCTTCCCTCTTTCCTTGTCCCACCCTCTCTTCTCATTCTCCCTCTTCTAAAATTGACTTCATGCTGTCTTTCTCCTCCGTGTCACGGTCCCCTTATCCTAAATCCAACGGCTACAGTTCTTCAATCGGTAATGCGCTTCAAAATCTCTGCATTGGCAGACATTATGCTTTCAGAAATTCGAATTCTCCCAGCTTTGTTACTATGGCTTCTGTCAACAGAGAGCCCATGGTTCCCCCTTTCCACGTTTTGATAACTGGTTCAAGCAAAGGAATAGGGTATGCATTGGCCAAAGAGTTTCTAAGAGCTGGTGACTATGTCATAATATGCTCAAGATCAAATGAAAGGGTAGAATCCGCTGTCCAGAGCCTGAGAGAAGAATTTGGGGAGCAGTATGTGTGGGGCACTAAATGTGATGTGAGAGAAGCAGAAGACGTGAAGAATTTAGTTGCATTTGCTCAGGAGAAACTGAAATACATTGATATATGGATTAATAATGCAGGATCAAATGCATATAGCTACAAGCCTCTTGCAGAGGCTTCAGATGAAGATCTTATAGAGGTAGTAACAACAAATACACTTGGTTTGATGATATGCTGTCGAGAGGCTATAAAGATGATGGTGAACCAGCCTCGTGGAGGTCATATTTTCAATATTGATGGAGCAGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCATATGGAGCTACAAAGCGAAGTGTGGTGCATTTAACAAAATCATTACAGGCAGAATTACAGATGCAGGATGTAAAAAATGTTGTGGTGCATAATCTTTCGCCAGGGATGGTCACAACCGATCTTCTCATGTCTGGTGCTACAAGTAAGCAGGCAAAATTTTTCATTAATGTGTTGGCTGAACCAGCTGAAGTGGTTGCAGAATACTTGGTTCCAAATATTAGATCTATGATTGCCAATGGATCAATGAAGCCAACGTACATTAGATTCCTCACTGGGGTGAAAGCCTATTCCCAGATATTTTCACGATTTGCATTCGGGGCAAGAAGGAACAGGTACTTGATTGAAGATTAA 1053 0.4217 MASLFPCPTLSSHSPSSKIDFMLSFSSVSRSPYPKSNGYSSSIGNALQNLCIGRHYAFRNSNSPSFVTMASVNREPMVPPFHVLITGSSKGIGYALAKEFLRAGDYVIICSRSNERVESAVQSLREEFGEQYVWGTKCDVREAEDVKNLVAFAQEKLKYIDIWINNAGSNAYSYKPLAEASDEDLIEVVTTNTLGLMICCREAIKMMVNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGATSKQAKFFINVLAEPAEVVAEYLVPNIRSMIANGSMKPTYIRFLTGVKAYSQIFSRFAFGARRNRYLIED 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1490 350 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 56 348 - -
Dere07g1490 350 Pfam short chain dehydrogenase 82 278 IPR002347 -
Dere07g1490 350 CDD SDR_c 83 311 - -
Dere07g1490 350 PRINTS Glucose/ribitol dehydrogenase family signature 259 276 IPR002347 -
Dere07g1490 350 PRINTS Glucose/ribitol dehydrogenase family signature 235 254 IPR002347 -
Dere07g1490 350 PRINTS Glucose/ribitol dehydrogenase family signature 82 99 IPR002347 -
Dere07g1490 350 PRINTS Glucose/ribitol dehydrogenase family signature 158 169 IPR002347 -
Dere07g1490 350 PRINTS Glucose/ribitol dehydrogenase family signature 208 224 IPR002347 -
Dere07g1490 350 FunFam Chlorophyll(Ide) b reductase NOL, chloroplastic 78 323 - -
Dere07g1490 350 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 222 250 IPR020904 GO:0016491
Dere07g1490 350 Gene3D - 81 310 - -
Dere07g1490 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 222 IPR002347 -
Dere07g1490 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 169 IPR002347 -
Dere07g1490 350 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 235 254 IPR002347 -
Dere07g1490 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 82 301 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1490 Dere-ChrDere07 19788420 19798588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1490 83 275 Acyl Lipid Metabolism Gene Families AT1G24360 30.808 5.48e-17 79.0