Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1469 ATGCCGAAGAAGAAGCATAGCGACAGTGATGAAGAAGATGTCTTCTATTACCGCTATTCTTCCACTTCATCTTATTCAGCACCCTCCTCAAACGCCGCCCGAACCCACAAGACTTCCGGTGGCTCCGGTGGTTTAGCTCCCTCCAAATCCACCCTCTACGTCTCCAACCTCGACTTCTCGCTCACCAACTCTGACCTCCATACCCTCTTCTCCACCTTCGGCAAAATCGCCCGAGTCACCGTTCTCAAGGACCGAGTCACTCGCCAGAGCCGCGGCGTTGCTTTCATCCAATACGTTTCTCGCGAGGATGCGCAGAAAGCCGCGCGAGAGATGAACCGCAAAATCCTCAACGGCAGGACCTTGACGGCTTCCATCGCCGCCGATAATGGCCGAGCACCCGAATTTATCAAAAAAAGGGTTTATAGGGATAAGAGTCGGTGTTATGAGTGTGGGGAAGCAGGGCATTTGTCTTATGAATGCCCCAGGAATCAGTTGGGGCCCAGGGAGCGTCCGGTTCCAAAGCGTGAACGACGCGGTGGAGGCGTCGGCGGTGGTGGTGGTGGGACTGGGTTCCGGAGGACGGAGGAGGATGATGATGGATCGGATGGTGGGGATCGTTTTGAGGATGATAACTGGGCTTCTATTGTGGATAATGGAGCGGATGAGAGGTTGCTAACAGGAAACGAGAGGGTTGTGGAGAAGAAGAAGGCAAAGAAAGCAAGCTATTTCAGTGATGAGAGTAGCGAAGAGGATGATTGA 759 0.5349 MPKKKHSDSDEEDVFYYRYSSTSSYSAPSSNAARTHKTSGGSGGLAPSKSTLYVSNLDFSLTNSDLHTLFSTFGKIARVTVLKDRVTRQSRGVAFIQYVSREDAQKAAREMNRKILNGRTLTASIAADNGRAPEFIKKRVYRDKSRCYECGEAGHLSYECPRNQLGPRERPVPKRERRGGGVGGGGGGTGFRRTEEDDDGSDGGDRFEDDNWASIVDNGADERLLTGNERVVEKKKAKKASYFSDESSEEDD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1469 252 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Dere07g1469 252 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like 137 172 - -
Dere07g1469 252 MobiDBLite consensus disorder prediction 159 252 - -
Dere07g1469 252 MobiDBLite consensus disorder prediction 223 245 - -
Dere07g1469 252 CDD RRM_ZCRB1 49 124 IPR034219 -
Dere07g1469 252 SMART rrm1_1 51 124 IPR000504 GO:0003723
Dere07g1469 252 SMART rrm2_1 51 124 IPR003954 GO:0003676
Dere07g1469 252 MobiDBLite consensus disorder prediction 22 45 - -
Dere07g1469 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Dere07g1469 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Dere07g1469 252 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 134 - -
Dere07g1469 252 SUPERFAMILY Retrovirus zinc finger-like domains 131 163 IPR036875 GO:0003676|GO:0008270
Dere07g1469 252 Gene3D - 137 171 - -
Dere07g1469 252 Gene3D - 26 208 IPR012677 -
Dere07g1469 252 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 5 251 IPR044598 GO:0000398|GO:0005689
Dere07g1469 252 ProSiteProfiles Zinc finger CCHC-type profile. 146 162 IPR001878 GO:0003676|GO:0008270
Dere07g1469 252 MobiDBLite consensus disorder prediction 191 212 - -
Dere07g1469 252 SUPERFAMILY RNA-binding domain, RBD 47 133 IPR035979 GO:0003676
Dere07g1469 252 Pfam Zinc knuckle 146 161 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1469 Dere-ChrDere07 19433059 19433817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1469 50 126 Eukaryotic Initiation Factors Gene Family AT4G34110 32.468 1.27e-07 50.4