LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g1466	ATGACCAATAAGACTGAAGAAGAGGTTCTCCTCAAGGATCAGAGTGGGTCACATTTAAATGATGAGAGTAATGGAGGAAGTGCTGGTGGAGTTGCCTTGAAGAAAGGGCCATGGACATCTGCTGAAGATGCTATTTTAGTGGACTACGTCCAGAAGCATGGGGAGGGCAACTGGAATGCTGTTCAAAAGTACTCAGGCCTGTCCCGTTGTGGCAAAAGCTGCCGGCTCCGGTGGGCAAACCACCTAAGGCCAAATTTAAAGAAAGGCGCGTTTACTGCAGAGGAAGAGAAGCTGATTGCTGAATTGCATGCCAAGATGGGAAACAAATGGGCACGCATGGCTACACATTTACCTGGTCGGACAGATAATGAGATAAAAAATTACTGGAATACTCGGATCAAGAGGCGGCAACGGGCTGGCTTGCCACTTTATCCACCTGAAGTGTGTTTGCAATCAATGCAAGAGAGACAGCATGGCCAAAGCAGTGTTGGAATTAATGATGGTGATAGAGGAAATCATGACTTCCTGGCAAAAAAGAATGATGAGATACACAATGCTATACTTGATAGTCTGAGGGCTAATCAGGGGTTCTTACCCTATATGCCCAAGCTTCCTGATATATCTGCTAATAGCATTCTGTTGAAAGGTCTTGATTCATCACAACATTGTAATTTTGTGCCATCAACATTACCTCACCATAAACGTCTTCGAGGGATGACAATGCCATTTCTAGGTTTCTGCAGTACTAATGCTAATGGGTTTGATCCATTTGACCATAGTTGGGATAATACTTCTGATATGATTGCACAATCATTTGGAATGCATTCTTCTCTTGATCATGGTCCCTCCTCACAGAATTCATTTTCTTACAGCCATTCACATTCAAATGGCTATTCCTCTACTTCTAAGCCAATCCCCGAGGCTGTGAAGCTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGTAGCTGGGATACATCTCCACTACCTCCTTTGCTCAACTCAGTTGATTTTGAAATTCAGTCTCCTTCCCCAACTAGTGCGCTGGAGCCTGATTGTTCCTCACTGGACAATAGTGGCCTTCTGGATGCTTTACTTCCCCAGACAAAAGCTCTAAGCAGTTCAAGGAATCATTATTTTGAGAAGAGTTCAAATTCATCCGCTGCAACTCTTGGTGATAGAGCTGACAGTTCCACATTGAACATGTATGGGACAAAATGGGAGGACTACATTGACCCCGTTTCTCCATTTGGTGCAATATCAATCTTGAGTGAATGCCCTGCTATTTGTGCCAATAAGTTGTCCTTCGATGAGCAACCACCTGCTCAGACCTTAAGTGGCAACAGCGTAAAATTTGAATCTATTGACCCTGTTTGGACCTCCAACAGTGAAGATCAAACCGTGTCCATGTTGGACATTGCTGGGCCAGATGTCTTCCTTGCTTCATGTTGGTTTGAGGATGGTTCTGATGCTACTACTACCCTTGGTAATGATTTAGCAACTTCTACATCAAGTGAAGTGTGTGGGCATGGTTCTAGTGCATGGGATAGCATGCCTTCTGTTTGTCAAATGTCTGATCTTCCTTGA	1593	0.4413	MTNKTEEEVLLKDQSGSHLNDESNGGSAGGVALKKGPWTSAEDAILVDYVQKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEKLIAELHAKMGNKWARMATHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQSMQERQHGQSSVGINDGDRGNHDFLAKKNDEIHNAILDSLRANQGFLPYMPKLPDISANSILLKGLDSSQHCNFVPSTLPHHKRLRGMTMPFLGFCSTNANGFDPFDHSWDNTSDMIAQSFGMHSSLDHGPSSQNSFSYSHSHSNGYSSTSKPIPEAVKLELPSLQYPETDLGSWDTSPLPPLLNSVDFEIQSPSPTSALEPDCSSLDNSGLLDALLPQTKALSSSRNHYFEKSSNSSAATLGDRADSSTLNMYGTKWEDYIDPVSPFGAISILSECPAICANKLSFDEQPPAQTLSGNSVKFESIDPVWTSNSEDQTVSMLDIAGPDVFLASCWFEDGSDATTTLGNDLATSTSSEVCGHGSSAWDSMPSVCQMSDLP	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g1466	530	ProSiteProfiles	Myb-like domain profile.	83	133	IPR001005	-
	Dere07g1466	530	MobiDBLite	consensus disorder prediction	279	303	-	-
	Dere07g1466	530	MobiDBLite	consensus disorder prediction	1	15	-	-
	Dere07g1466	530	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	83	137	IPR017930	-
	Dere07g1466	530	Gene3D	-	34	87	-	-
	Dere07g1466	530	MobiDBLite	consensus disorder prediction	1	34	-	-
	Dere07g1466	530	Pfam	Myb-like DNA-binding domain	35	82	IPR001005	-
	Dere07g1466	530	Pfam	Myb-like DNA-binding domain	88	131	IPR001005	-
	Dere07g1466	530	Gene3D	-	90	136	-	-
	Dere07g1466	530	SMART	sant	34	84	IPR001005	-
	Dere07g1466	530	SMART	sant	87	135	IPR001005	-
	Dere07g1466	530	ProSiteProfiles	Myb-like domain profile.	30	82	IPR001005	-
	Dere07g1466	530	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	2	494	-	-
	Dere07g1466	530	SUPERFAMILY	Homeodomain-like	33	129	IPR009057	-
	Dere07g1466	530	FunFam	Transcription factor GAMYB	90	136	-	-
	Dere07g1466	530	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	30	82	IPR017930	-
	Dere07g1466	530	CDD	SANT	37	82	IPR001005	-
	Dere07g1466	530	CDD	SANT	90	131	IPR001005	-
	Dere07g1466	530	FunFam	MYB-related transcription factor	34	87	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g1466	Dere-ChrDere07	19392703	19396385	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g1466	23	523	MYB Transcription Factor Family	AT3G11440	42.329	2.30e-114	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere07g1466		Myb_DNA-binding	7.9e-15	CL0123