Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1448 ATGGAAGAAGCCAACAGTGCCACAGAAGGATGTGTCGTTGCTCCTCTGGAACCGTCGTCTTACCGGGGAGTTCGCAAGCGAAAATGGGGCAAATGGGTGTCGGAAATCCGTGAGCCCGGCAAGAAAACTCGGATATGGTTAGGGAGCTATGAGTCGCCGGAGATGGCAGCAGCAGCGTATGATGTAGCAGCGTCACACTTTCGAGGGCCATCGGCGCGGCTTAACTTCCCCGAGTTCTACGGCGCTCTTCCCCGGCCGGCAAGCTCCAGAGCCGAAGACATCCAGCTGGCGGCTCAACAAGCAGCATTGCTATTCAGTAGACCGCCGAAATGCCGGTCACCGGAGGACGCCGGAGACCGTGTGGTTCCGGTCACAGTGGGGCTGTCTCCGAGCCAGATTCAGGCCATCAATGAGTCACCATTGGATTCGCCAAAGATGTGGATGCAAATGGCTGAGGCTCTCATGTTAGGGTTTGATGAGTCTATGGCATTATTGTATGATAACGACGATGCATTGAAATTGAGTGGATGGGAAGAAATACAGCACGAGTCAATATGGGACTTCTAA 567 0.5414 MEEANSATEGCVVAPLEPSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSYESPEMAAAAYDVAASHFRGPSARLNFPEFYGALPRPASSRAEDIQLAAQQAALLFSRPPKCRSPEDAGDRVVPVTVGLSPSQIQAINESPLDSPKMWMQMAEALMLGFDESMALLYDNDDALKLSGWEEIQHESIWDF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1448 188 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Dere07g1448 188 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Dere07g1448 188 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Dere07g1448 188 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Dere07g1448 188 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Dere07g1448 188 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Dere07g1448 188 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Dere07g1448 188 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Dere07g1448 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 122 - -
Dere07g1448 188 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1448 Dere-ChrDere07 19160050 19160616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1448 18 187 AP2-EREBP Transcription Factor Family AT1G71450 50.000 5.81e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere07g1448 AP2 1.6e-13 CL0081