Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1435 ATGGGATGCCTCTGCTCAAAGGACCAGAATGAAGTTGATGAATGTGAGAAAGAAGAAGACTTAACCAAGTCGTCATCAGTACAACTGGTTGCTCCAGCTATCTCAACTGCACAGAAAGGTGGCGGTGCTGACACTGATGGTTCAGTGAATCGGCTGCTTAAGAAATATTCACAAGCAAATTTGGGATCTCTTAATGCACCACCATCAGGAGATAAAAACAACAACAAGGTAGCTGATGGAAAACAGGTAAAAGGCCAACATCAGAGATGTGTAACATTAGATGCTGGTGTTATGGAAGGAAAGTCAATAATGTCTAGAATACTTAGCATGTCACGGAGTGCAGAAGGAGAACATGTTGCTGCTGGGTGGCCATTGTGGTTATCTTCGGTCGCCGGAGATGCCATCAAAGGGTGGGTGCCTCGACGGCTAGACTCTTTCGAGAAGTTAGGCCAAGTGGGACAAGGCGCTTATAGCAGTGTACATAAGGCTCGTGACCTACAAACTGGTAAAATTGTGGCATTGAAGAAAGTGCGTTTTTCAAATACAGATGCAGAAAGCATTCGCTTTATGGCTAGGGAAATCTATATTTTGCGACGACTTGATCATCCAAATGTCATGAAGCTTGAGGGTATTGTCACATCAAGGACGTCCAGCAGCTTGTATCTTGTGTTTGATTACATGGAACATGGCCTTGATGAGCTAGAAGCACTGCCTGGCGTAAAGTTCACTGAACCTCAGATTAAATGTTATATGCAGCAACTGCTTTGTGGGCTTGAACACTGCCATAGTCGTGGTGTGCTACACCGCGACATCAAGGGTTCAAATCTGCTGATTGACAACAACGGAATTCTTAAGATTGCAGACTTTGGTCTTTCCACCATTTACGATCCTGACAAAAAGCAGCCATTGACTAGCCGTGTTGTGACTCTGTGGTATAGGCCACCTGAGCTTTTGCTTGGTGCTACTGAGTATGGAGCTGCAGTTGACTTGTGGAGTGCTGGTTGCATCCTAGCAGAATTGTTGACCGGGAAGCCTATTATGCCTGGAAGAACAGAGGTGGAACAAATGCACAACATTTTTAAGCTTTGTGGTTCCCCATCTGAAGAGTTTTGGCAGAGAACAAAATTGCCACATGCAACATGTTTTAAACCTCAACATCGTTACAAACGCCGCGTTTCCGAAACATTTAGAGACTTTTCTCCATCCGCCTTGGCTCTTGTTGATAAGTTCCTTGCAATAGAACCAGAAGAACGAGGATCAGCAACTTCTGCACTTCAGAGTGAGTTCTTCAAAACAATGCCCCTACCTTGTGATCCATCAAGTTTGCCAAAGTTCCCTCCGAGCAAGGAGTTTGATGCCAAGCTTCATGAGGAAGCAAGAAGGAAAAACACTGAAGCTGTAAAACGACGTGGACCAGTGTCGGTTGCAAGGGGTGCAAGGGATACGAGTGCACTCCGGACACCAGACTTCAATGCTCAGGGAAATATGTCCGTACAGGCTAATTCAAATACTAAAACGTCCAGTGATATATATAACGCCTGTGAAGATGATACTTCTCATTTCAAGATCACGCCAGCTGGAGTCTCTGTACAGAATGACTACGATCATTCTACTTCAGTGATGCACAATGCTGCAGCAGGATCGCCGTTGAATAACAGATCAGACTCTAGTGGGAGGAATCCAGAGTTAAGGACTCAGAGATCTAATGTAAACCAGGCAGTAGCAGATTTTTGTAACTCTTCCCTTATAAAGGACAAAGGCATTCCTGGCAGAGACTCCAGAACAAGTTATGCGCTGAAGAAAAACAGGATGCACCACTCTGGACCATTGGTTCCTCCAGGGGATAACATCGATGACATGCTCCGAGAGCATGAGAGATTAATGCAGGAAGCATTCCGAACTGTCAAGAGCAAGAATAATCAAAGAAATTAA 1932 0.4477 MGCLCSKDQNEVDECEKEEDLTKSSSVQLVAPAISTAQKGGGADTDGSVNRLLKKYSQANLGSLNAPPSGDKNNNKVADGKQVKGQHQRCVTLDAGVMEGKSIMSRILSMSRSAEGEHVAAGWPLWLSSVAGDAIKGWVPRRLDSFEKLGQVGQGAYSSVHKARDLQTGKIVALKKVRFSNTDAESIRFMAREIYILRRLDHPNVMKLEGIVTSRTSSSLYLVFDYMEHGLDELEALPGVKFTEPQIKCYMQQLLCGLEHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLSTIYDPDKKQPLTSRVVTLWYRPPELLLGATEYGAAVDLWSAGCILAELLTGKPIMPGRTEVEQMHNIFKLCGSPSEEFWQRTKLPHATCFKPQHRYKRRVSETFRDFSPSALALVDKFLAIEPEERGSATSALQSEFFKTMPLPCDPSSLPKFPPSKEFDAKLHEEARRKNTEAVKRRGPVSVARGARDTSALRTPDFNAQGNMSVQANSNTKTSSDIYNACEDDTSHFKITPAGVSVQNDYDHSTSVMHNAAAGSPLNNRSDSSGRNPELRTQRSNVNQAVADFCNSSLIKDKGIPGRDSRTSYALKKNRMHHSGPLVPPGDNIDDMLREHERLMQEAFRTVKSKNNQRN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1435 643 ProSiteProfiles Protein kinase domain profile. 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1435 643 PANTHER CELL DIVISION PROTEIN KINASE 144 436 - -
Dere07g1435 643 Pfam Protein kinase domain 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1435 643 MobiDBLite consensus disorder prediction 61 81 - -
Dere07g1435 643 FunFam probable serine/threonine-protein kinase At1g54610 229 470 - -
Dere07g1435 643 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Dere07g1435 643 Gene3D Transferase(Phosphotransferase) domain 1 229 469 - -
Dere07g1435 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Dere07g1435 643 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Dere07g1435 643 MobiDBLite consensus disorder prediction 9 23 - -
Dere07g1435 643 MobiDBLite consensus disorder prediction 1 29 - -
Dere07g1435 643 MobiDBLite consensus disorder prediction 543 570 - -
Dere07g1435 643 Coils Coil 621 643 - -
Dere07g1435 643 MobiDBLite consensus disorder prediction 61 85 - -
Dere07g1435 643 SMART serkin_6 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1435 643 SUPERFAMILY Protein kinase-like (PK-like) 139 438 IPR011009 -
Dere07g1435 643 FunFam probable serine/threonine-protein kinase At1g54610 133 228 - -
Dere07g1435 643 CDD STKc_CDK9_like 146 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1435 Dere-ChrDere07 18976150 18981611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1435 138 470 Core Cell Cycle Gene Families AT5G10270 52.722 1.62e-120 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere07g1435 Pkinase 1.2e-69 CL0016