Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1422 ATGCTCGAGGAAAAGCGCTCTACCGAGCGAGAGACAGAACACGAGCTGCCGAAGTTGCTGGTAGCCGACGTTGGTTTCATTATTCCAAGAATTGTTAGGTGCTGGTTGTTTCGAAGCAAGGAATTTAGATTGCAAAGAAAAATGATGAGGCTACAGACATATGCGGGGCTTAGTTTGATTGCAACTCTTGCTGTTACATATCATGCATTCAACAGCAGAGGTCAGTTTTATCCAGCAATGGTGTTTCTGTCAACTTCCAAGATCAGTTTGGTACTTCTTCTCAACATGGGTCTGGTCATTATGTGCCTTTTATGGCAATTGACCAAGAAGGTATTCCTTGGCACACTCCGAGAGGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTTACATTTCTTGCTATGGTTACAGCACTGTTGTTGATTAAAGCTTTGCTTTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACCACTCCTTCAGCACCCTTGTTGTCTCACATTCGAATTGTATCTTTTATGGGTTTCCTCCTTCTTCTGGACGGACTCTTTTTATATAGTTCTATGAAGCATTTGATACAATCATGGCAGGCTTCGGTTTCTCTCTTCTTTGCTTTTGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATCTTTTCTATGTCGGCGATTTGCTTATGGACGGGCAATGGGAAAGGAAGCCAGTCTTCACATTTTACCTGGAACTCATTAAGGATTTGCTTCACTTGTCTATGTATATGTGCTTCTTCCTTGTAATTTTCATAAACTATGGTGTTCCATTGCACTTAATACGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGATTACATACGCTATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCCACCTGTATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTGATATGTGGACATCTTTTTCATGTGCATTGCCTCCGGTCATGGTTGGAGCGGCAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAGCTGCTGCTGGAGGGCAGCACGGATCACAGTCAGATCGACAGGGAACAGGAACAGAAACGGGTACTGGAAGCACAGCTCAAGCTGAAGTTGGCAGTGGGGTGGCAACTGATAATTTGAGTCGGCATCAAGCAAGACTCCAAGCTGCAGCTGCAGCTGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCAGCAACCTCTTCAGTATGCTCGCCTGGATACACTGTTTATCCTCCTGTCCAAAGACCTATGGCTGAATCTACTAATACTGAGCTTAATCTAGAACATGCTTCGAATGAACAAACACAAAGACCGTTTATCATCCCTGGTGGACCAGTGAATGTTTCCTTTCTTCCAATGGGACCGTTTCTTTTTCCTCCTTCCCCAACAAATGTAGCCAATGTGAATTATGGAGAGGGATTTGATCCAAATATGCCAGGCTCTCTGCAGGAAGCTCAGAGAAAACTTCAACACCAGATTGAGATTCTGCAAAATCAGCTCCAGCTTCTGCAGAAGACAAAGGTTGAGGGAAGTGTAAATGAGGGCAAATCATCAAGTAGCAAAGGCAAGCAAATTGCTTCCTCTTCATCCGTCTCTGACCATGGCCCTCCTGAGGAGTTTCAAGATGGCAGTGCATAA 1800 0.4372 MLEEKRSTERETEHELPKLLVADVGFIIPRIVRCWLFRSKEFRLQRKMMRLQTYAGLSLIATLAVTYHAFNSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALLWLAQKRVEYIETTPSAPLLSHIRIVSFMGFLLLLDGLFLYSSMKHLIQSWQASVSLFFAFEYMILATTTVSIFVKYLFYVGDLLMDGQWERKPVFTFYLELIKDLLHLSMYMCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTAAAGGQHGSQSDRQGTGTETGTGSTAQAEVGSGVATDNLSRHQARLQAAAAAASIYEKSYVYPSATSSVCSPGYTVYPPVQRPMAESTNTELNLEHASNEQTQRPFIIPGGPVNVSFLPMGPFLFPPSPTNVANVNYGEGFDPNMPGSLQEAQRKLQHQIEILQNQLQLLQKTKVEGSVNEGKSSSSKGKQIASSSSVSDHGPPEEFQDGSA 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1422 599 Pfam Ring finger domain 338 377 IPR001841 -
Dere07g1422 599 Coils Coil 536 560 - -
Dere07g1422 599 SMART ring_2 339 376 IPR001841 -
Dere07g1422 599 MobiDBLite consensus disorder prediction 561 589 - -
Dere07g1422 599 MobiDBLite consensus disorder prediction 387 417 - -
Dere07g1422 599 MobiDBLite consensus disorder prediction 561 599 - -
Dere07g1422 599 MobiDBLite consensus disorder prediction 390 417 - -
Dere07g1422 599 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 311 386 - -
Dere07g1422 599 SUPERFAMILY RING/U-box 319 383 - -
Dere07g1422 599 PANTHER RING ZINC FINGER PROTEIN 45 555 - -
Dere07g1422 599 CDD RING-H2_synoviolin 336 377 - -
Dere07g1422 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 384 IPR013083 -
Dere07g1422 599 ProSiteProfiles Zinc finger RING-type profile. 339 377 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1422 Dere-ChrDere07 18616713 18623365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1422 48 583 C3H Transcription Factor Family AT3G16090 64.804 0.0 663