Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1409 ATGTACAAAAGGTTTCCAAGGTTGGACATTGGTGTCACATCAGAAGAATCGGATGCTGGTGATACGAAAAGCTCAAATAAAACAAGCATGCCTAAAGTTTTTAGATGTGGAAGAAGAAAGGAAACAACAACCAGAGAATTATCAAGCAAAATGGGAAAAGTTGATTTGGCTGATCTAGAATGGGTCAATATGATTCCAGAGTGTCCAGTATACTGTCCATCAGAACAGGAGTTTGAGGATCCTTTATCTTATCTACAGAAGATTGCTCCTGAGGCATATAAATTTGGAATATGTAAAATTGTTTCTCCTATAAATGCCTCTATTCTGGCGGCTGTTGTCTTAATGAAAGAGATAAAAGACTTCAAGTTTGAAACTATTGTACAGCCTCTTCGGCTCTCTGAATGGAATGAGAACAATGAAATAACATTTACTCTGAGAGGCAGAAAATATACATATCGTGAGTTTGAGACTCTAGCAAACAAGGCCTTTCTTAGTCGATTTTACAGTTCAGGAGGTCTTCCTTCTTCATATGTGGAAAAGTTGTTCTGGCATGAGATGGAGCATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTAGAAGGTAGTGCTTTCTCATGTGACCCTGATGACAAACTTGGAAAAAGCAAATGGAATTTGAAGAATTTCTCACGGCTACAAAAATCCACATTGCGGTTGATTGACAGAGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTATTCAGCATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATTAACTATCATCATTCTGGAGCAAGTAAAACTTGGTATGGTGTTCCAGGCTATGCAGCCTCTCAATTCGAAGAGGTTGTCTTAGATTACATGTATTGCAATGAGAATTTTTCAAAACATGGAAAGGATGGTGCCTTCCAAGTTCTTGCTCATAAAACAACCATGTTTTCTCCAAATGTCTTGCTCCAACATGATGTGCCAGTTTACAAGGCTGTGCAAAAGCCAGGAGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTGTCAGTGATTGGTTTCCACTAGGGGCTGAAGCTACAAAACGTTATGCACATCTAGGAATGCTGCCTATTATTCCCTTTGAGGAACTTCTTTGTAGAGAGGCAATGCTGATTTACAAGGCCTCAAAATTCAGAGGCTTGAAGAACAAACTCAAACAAGATTTGGCATCTCACCATGCTACTAAGCTATCTTTCATGCTCCTTATGCGAATTTACAAGCGTGCCCTTCTGAGAATGAGCAGTTCAAGTGAGCCTTCAAGTTCTTCAAATTCCCTAGGTACTGTGATATGCAGCCACTGCGCCAGAGACTGTTATGTGGCTTATTTGCTGTGCAAGTACTGCTATTCTCACCCCATTTGTCTTTTCCATGGCATTGAAACTCAGACTTGCTTATGCGGTAGACAATATACAATTTTCAGAAGAGATGATATGTTGTTACTGAAAGATGCTGCCACAAGTTTTGAGCAGGAAAAAGAGAGTATGTTGGAGGTTCAGGAATATAGTGGAGTAAATGGTCTCTCTCTTTCAAGGATATTCCCCAGCACCAGACAAGAAGGCATTCCAGAAATAAAGAAAAAACCTTGCCATGAAGAAAGAAGTGCCAGGGGAACTGTTTCGTCCATGGAGATAGCATCTAGCCTGAAAACAAGAGAAGAGGACACTGTTGAGCTCAATTGGGAAAGGAATAAGAAGATAGTACTGAAGTTAAGTGGAAAGAGAGGGCCTCCAACAGTGATCGGTGACAGGAGAGCACAAATGAACTCTAAATTACAAAGAAATGAATCAAATCTGACTCTAACTTCTCCAACAGTATCTTCCACTGCTTGA 1932 0.4001 MYKRFPRLDIGVTSEESDAGDTKSSNKTSMPKVFRCGRRKETTTRELSSKMGKVDLADLEWVNMIPECPVYCPSEQEFEDPLSYLQKIAPEAYKFGICKIVSPINASILAAVVLMKEIKDFKFETIVQPLRLSEWNENNEITFTLRGRKYTYREFETLANKAFLSRFYSSGGLPSSYVEKLFWHEMEHGEKGTVEYGVNVEGSAFSCDPDDKLGKSKWNLKNFSRLQKSTLRLIDREIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGASKTWYGVPGYAASQFEEVVLDYMYCNENFSKHGKDGAFQVLAHKTTMFSPNVLLQHDVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAVSDWFPLGAEATKRYAHLGMLPIIPFEELLCREAMLIYKASKFRGLKNKLKQDLASHHATKLSFMLLMRIYKRALLRMSSSSEPSSSSNSLGTVICSHCARDCYVAYLLCKYCYSHPICLFHGIETQTCLCGRQYTIFRRDDMLLLKDAATSFEQEKESMLEVQEYSGVNGLSLSRIFPSTRQEGIPEIKKKPCHEERSARGTVSSMEIASSLKTREEDTVELNWERNKKIVLKLSGKRGPPTVIGDRRAQMNSKLQRNESNLTLTSPTVSSTA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1409 643 ProSiteProfiles JmjC domain profile. 215 385 IPR003347 -
Dere07g1409 643 FunFam Lysine-specific demethylase isoform A 63 412 - -
Dere07g1409 643 MobiDBLite consensus disorder prediction 619 643 - -
Dere07g1409 643 PANTHER LYSINE-SPECIFIC DEMETHYLASE 60 557 - -
Dere07g1409 643 MobiDBLite consensus disorder prediction 605 643 - -
Dere07g1409 643 SUPERFAMILY Clavaminate synthase-like 143 401 - -
Dere07g1409 643 Gene3D Cupin 68 431 - -
Dere07g1409 643 SMART cupin_9 212 385 IPR003347 -
Dere07g1409 643 ProSiteProfiles JmjN domain profile. 68 109 IPR003349 -
Dere07g1409 643 Pfam jmjN domain 69 101 IPR003349 -
Dere07g1409 643 SMART JmjN_1 67 108 IPR003349 -
Dere07g1409 643 MobiDBLite consensus disorder prediction 561 582 - -
Dere07g1409 643 Pfam JmjC domain, hydroxylase 245 368 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1409 Dere-ChrDere07 18447898 18452049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1409 19 529 JUMONJI Transcription Factor Family AT2G34880 31.282 1.10e-59 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere07g1409 JmjC 4.3e-40 CL0029