Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1397 ATGGGAAGAAGAAATGGAGGAAGGTCTCTGCAAGAAATTCTTCGTCGTCGTCTCGAGACTTGCAAATCCAGGTACTCAACTATCGATGAAATTGTGAACCATCTCCGCTCAAATTACCCGGATTACCAGCGAACAAAGCAGCAAACTTTGACTCGATTTGTTCAAGAAGCTTTGGAATCGTCTAAGCGTGGGAACAAGCAGTTGAACAAAAAGCCCGGTACTCCCATTATGAAGGACGACACCTCAGAAGATGACGAGGACGAAGAAGAAGAGGGTCGAAGTACATCTCGAAAGAGGCGCAAGAAAATTGATGAGAGTGAAGAGAGATTGCAAAAGATGGAGAATTTACACCTTAGAAGGTTACAGAGTGATCAGGGCCGTACATCAACCTCTTCTGCTTCAACTTCAACTTCTAGTGAATCAATGTCGTCGGAGTCGGAGGAGAGTGACGGCGAAGACGGGGCTGTGTCGACATCAGAGGATGCAGTTTATGAGGAGAAAGTGGAGCCGGCCTTTGACTTGATGAAGACAATGTTGCGGGCTTCGTATTCAGGAACTAAGAATGTGAAATCTACAGTGGAGGAGAAAAACCTTGAATTGGAAGTGACCAATAATAGTAAGGCAACTAAGGTTGATGCTATGAATGGGATTGGATGTGAGACTAAATCGGGTTTGGAATTGAAGAGGCAGTTGAAGGGTTCAGTTTCAAATGGCAATGGGGATGTAGAGGTGAAAGGGAAGGATGGACCCAGATTCAAAGATTTGGGTGGAATGAAGGAGGTGCTAGAGGAATTGAAGATGGAAGTGATTGTGCCACTTTACCATCCGCAGTTGCCAAGAAGCTTAGGTGTGAGGCCAATGGCAGGGATTTTGTTGCATGGACCACCAGGGTGTGGGAAAACTAAACTGGCTCATGCTATAGCTAACGAGACTGGTCTTCCGTTCTATCAGATATCGGCTACGGAGGTGGTTTCCGGAGTGTCTGGAGCATCTGAAGAAAATATTAGAGAGCTTTTCTCTAAAGCCTACAGGACTGCCCCATCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAACGTGAGATGGAGAAACGAATAGTGACACAGTTAATGACTTCTATGGATCAATCGCACAAGCTTCTACAACCAGCTGATGATTCAGGAAGTCCTGATGCCCATCCTGGCTATGTTCTTGTTATTGGAGCTACGAATAGGCCTGATGCTGTTGACCCAGCCCTAAGAAGGCCTGGGCGGTTTGATCGTGAAATTGTCCTTGGCATTCCTGATGAATGTGCAAGGGAGGAGATCTTGTCTGTGCTTACTTGCAATCTTAAACTAGATGGCTCTTTTGATCTTCGAAAAATAGCCAGATCTACACCAGGTTTTGTTGGAGCTGATTTGGCAGCTCTGGCTAACAAGGCAGGGAACCTAGCAATGAAGAGAATTATTGATGAAAGGAAACACGAATTATCCCAAGATCTTTTGGATGAGCACAGTGAAGAGTGGTGGAGAACACCTTGGTTGCCCGAAGAGATGGATAAGCTTGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAATTGGTGCAACCTTCATCAAGAAGAGAAGGATTCTCTTCCATTCCTAATGTAAAATGGGATGATGTTGGTGGGCTTGATCTTCTAAGACAAGAGTTCGAGCGTTATATAGTTAGACGCATAAAATATCCAGAGGATTATGAGGGATTTGGGGTGGATCTTGAGACGGGATTTTTGCTTTATGGACCACCAGGGTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGAGCTAATTTTATTCATATCAAGGGCCCTGAACTTCTAAATAAATATGTTGGAGAAAGCGAGTTAGCAGTGCGGACATTGTTTAGCCGTGCTAGGACATGTTCGCCTTGCATACTATTCTTTGATGAGGTGGATGCGTTGACTACCAAACGTGGTAAAGAAGGTGGATGGGTTGTTGAGCGATTACTGAACCAGTTGCTCATTGAATTAGACGGTGCAGAGCAAAGGCAGGGTGTTTTTGTTATTGGTGCTACAAACAGGCCTGAGGTGATGGACCGTGCTGTACTTCGGCCTGGTAGGTTTGGTAAACTTCTTTATGTTCCTCTGCCAAACCCAGATGAGCGAGGATTGATTTTGCAAGCTCTTGCAAGGAAGAAGCCTGTCGATGACTCTGTGGATTTGAGTGCCATTGGAAGAATGGAAGCTTGTGAAAATCTAAGCGGCGCTGATCTTGCCGCATTGATGAACGAGGCAGCGATGGCTGCTCTTGAAGAGAAATTGATATCAACAGAGAGAACTTCTGATACATTGACCATCAAGTTAAGCCATTTTGAGACAGCACTGAGTAAAATCTCTCCGTCCGTGTCAGACACGCAAAAACAATACTATCAACGATTGTCAGAGAATTTTAAAGCGGCATGA 2478 0.4459 MGRRNGGRSLQEILRRRLETCKSRYSTIDEIVNHLRSNYPDYQRTKQQTLTRFVQEALESSKRGNKQLNKKPGTPIMKDDTSEDDEDEEEEGRSTSRKRRKKIDESEERLQKMENLHLRRLQSDQGRTSTSSASTSTSSESMSSESEESDGEDGAVSTSEDAVYEEKVEPAFDLMKTMLRASYSGTKNVKSTVEEKNLELEVTNNSKATKVDAMNGIGCETKSGLELKRQLKGSVSNGNGDVEVKGKDGPRFKDLGGMKEVLEELKMEVIVPLYHPQLPRSLGVRPMAGILLHGPPGCGKTKLAHAIANETGLPFYQISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDQSHKLLQPADDSGSPDAHPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGIPDECAREEILSVLTCNLKLDGSFDLRKIARSTPGFVGADLAALANKAGNLAMKRIIDERKHELSQDLLDEHSEEWWRTPWLPEEMDKLAIKMSDFEEAVKLVQPSSRREGFSSIPNVKWDDVGGLDLLRQEFERYIVRRIKYPEDYEGFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEQRQGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPNPDERGLILQALARKKPVDDSVDLSAIGRMEACENLSGADLAALMNEAAMAALEEKLISTERTSDTLTIKLSHFETALSKISPSVSDTQKQYYQRLSENFKAA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1397 825 PANTHER AAA-FAMILY ATPASE 94 823 - -
Dere07g1397 825 MobiDBLite consensus disorder prediction 91 121 - -
Dere07g1397 825 ProSitePatterns AAA-protein family signature. 691 709 IPR003960 GO:0005524|GO:0016887
Dere07g1397 825 CDD RecA-like_NVL_r2-like 559 719 - -
Dere07g1397 825 Coils Coil 96 116 - -
Dere07g1397 825 MobiDBLite consensus disorder prediction 122 144 - -
Dere07g1397 825 FunFam Ribosome biogenesis ATPase RIX7 241 433 - -
Dere07g1397 825 Pfam ATPase family associated with various cellular activities (AAA) 290 432 IPR003959 GO:0005524|GO:0016887
Dere07g1397 825 Pfam ATPase family associated with various cellular activities (AAA) 592 720 IPR003959 GO:0005524|GO:0016887
Dere07g1397 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 822 IPR027417 -
Dere07g1397 825 FunFam ATPase, AAA family protein 549 727 - -
Dere07g1397 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 541 IPR027417 -
Dere07g1397 825 Gene3D - 435 543 - -
Dere07g1397 825 Gene3D - 243 433 IPR027417 -
Dere07g1397 825 MobiDBLite consensus disorder prediction 59 164 - -
Dere07g1397 825 Gene3D - 722 801 - -
Dere07g1397 825 FunFam Cell division control protein 48 homolog C 435 543 - -
Dere07g1397 825 Pfam AAA+ lid domain 743 797 IPR041569 -
Dere07g1397 825 Pfam AAA+ lid domain 457 492 IPR041569 -
Dere07g1397 825 SMART AAA_5 286 436 IPR003593 GO:0016887
Dere07g1397 825 SMART AAA_5 587 723 IPR003593 GO:0016887
Dere07g1397 825 ProSitePatterns AAA-protein family signature. 404 422 IPR003960 GO:0005524|GO:0016887
Dere07g1397 825 Gene3D - 549 815 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1397 Dere-ChrDere07 18305964 18310593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1397 522 823 Calmodulin-binding Proteins AT3G56690 43.750 2.37e-70 249