Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1373 ATGTTGACGTCCATCTTCTCTCTCTTGGGATTGATATTAAAGCCGCAACAGCTAAAGCTAAAGCCAAAACAAACTGTTCGCTATATCTTCTTTGAATTTAAATACTGGGAATTATTGTTGAGGCTTCTGGGGTTCGACTCTATGGCTGCGGTTGCTGAGATTTCCGTCGATGCGGCAGCTGCTAACAAATTGGACTCAAAACCCTCGTCTGAATCCGAATTCAATGTGCAAAAGCTCGTCGATATGTTTACAAAGTTGAACCCTTCGGCGAAGGAGTTCTTCCCTTCAAAATACTTTCATCATGATCATCTTCATCAGAGCTATATTCAGCTCTCACCCAACAATTTCCCGGTCAGCAATCAGACGTCAGCTGATGATAATTACCCAAACAGCCGAAGGAGAAGAAATAATTATAACCAGGGGAGGAGAAGGTCAAATGGAAGAATGCATAAGGCTCAAAGAGAAGATAGCATTAAAAGAACAGTATATGTTTCTGATATAGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTTAGCAGTTGTGGACAAGTTATTGACTGCCGAATTTGTGGTGATCCACATTCAATTCTTCGTTTCGCATTTGTGGAGTTTGCAGATGAGTATGGTGCAAGAGCAGCTTTAAACCTTGGTGGCACTGTGCTTGGATATTACCCAGTCAGGGTTCTTCCTTCCAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCAAGGTCAGAAGATGAGCGGGAAATGTGTAGCAGGACTGTCTATTGTACAAATATTGATAAAAAGATTACTCAAGCTGAAGTGAGGAATTTTTTCGAAACGGCTTGTGGTGAGGTTACCCGCTTGCGGCTTTTAGGGGATCATGTGCATTCAACGCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTATTGCACTAAATTGTAGCGGGATGCCCTTGGGAGGCCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCGAGGATCACTCGTCCAACATCACATTAA 1038 0.4335 MLTSIFSLLGLILKPQQLKLKPKQTVRYIFFEFKYWELLLRLLGFDSMAAVAEISVDAAAANKLDSKPSSESEFNVQKLVDMFTKLNPSAKEFFPSKYFHHDHLHQSYIQLSPNNFPVSNQTSADDNYPNSRRRRNNYNQGRRRSNGRMHKAQREDSIKRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSILRFAFVEFADEYGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKITQAEVRNFFETACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMPLGGQPIRVSPSKTPVRPRITRPTSH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1373 345 CDD RRM2_CID8_like 253 334 IPR034825 -
Dere07g1373 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 235 IPR000504 GO:0003723
Dere07g1373 345 FunFam Polyadenylate-binding protein-interacting protein 11 125 237 - -
Dere07g1373 345 SUPERFAMILY RNA-binding domain, RBD 125 236 IPR035979 GO:0003676
Dere07g1373 345 MobiDBLite consensus disorder prediction 325 345 - -
Dere07g1373 345 CDD RRM1_CID8_like 158 237 IPR034823 -
Dere07g1373 345 FunFam Polyadenylate-binding protein-interacting protein 10 251 329 - -
Dere07g1373 345 Gene3D - 245 338 IPR012677 -
Dere07g1373 345 Gene3D - 117 236 IPR012677 -
Dere07g1373 345 SMART rrm1_1 258 329 IPR000504 GO:0003723
Dere07g1373 345 SMART rrm1_1 161 231 IPR000504 GO:0003723
Dere07g1373 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 333 IPR000504 GO:0003723
Dere07g1373 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 327 IPR000504 GO:0003723
Dere07g1373 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 224 IPR000504 GO:0003723
Dere07g1373 345 MobiDBLite consensus disorder prediction 115 155 - -
Dere07g1373 345 SUPERFAMILY RNA-binding domain, RBD 247 338 IPR035979 GO:0003676
Dere07g1373 345 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 82 338 - -
Dere07g1373 345 Pfam Ataxin-2 C-terminal region 82 96 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1373 Dere-ChrDere07 17882548 17888260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1373 157 314 Eukaryotic Initiation Factors Gene Family AT1G34140 25.466 2.51e-11 62.4