Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1358 ATGTCAATTTCCGGAACCAGTTTCCTCAATTCAAGCAAGAAAGGATTGCTGGTGAGAAAATTCCACTTACAAAGGTCCTCGGAACCCCAAAAAAATGATGGGATTCGTTTTCAAGACTGTGTCTTACTTTTGCAACATCTGAGGGATAACGAGGACGTAAATTATGGTCGATCGCTTCATTCTTTCTTCATTAAAAGTGGCCTTGACAGAGATGTTTTTGTACAGAACAATATGATGAGGTTTTATGGGAATACTTGTGGGGACCTGAAAAATGCTCATCTTCTGTTTGATGAAATTCCTGAACCGAGTTTAATTTCTTGGACTAGTTTGGTCTCTTCTTACGTCCATGATGGGCAGCATGAAATTGGTTTGCACTTGTTTTCTCTCTTATGTCGGACCGTGTTGCGCCCAAATGAATTTGGTTTCTCTGTGGCGCTCAAGGCATGCAGAGTGATGCGTGATCCTGTCATGGGGAGACTCATTCATGGCTTAATAATTAAAAGTGGGTTTGAGTCACATAGCTTTTGTAGTGCTTCGATTATTCACATGTATGCTGAATCTGGAGATATTGAGAATTCAAGGAAGCTCTTTGACGGGATTACTTTGGGAGAGAGGTCTGAGGCCTTATGGAATACTTTGCTGAATGCTTATGTGCAGATGTCTGATGCAGAGGGAGCTCTGCGCTTGTTTCATAAGATGAGGCATTCTGCAATATCACCCAGTTGTTTTACTTACACAATCCTTGTCAAACTCTGTGCAGTTGTGTTCAATTTTGAGCTTGGACGGTGTATTCATGGCCAAACTGTGAAGGTCGGGATTGAAAATGATGTTGTGGTTGGTGGAGCTCTTGTTGACACCTTTTCAAGACTGGGAGTGCTAACTGATGCTTGTAGAGTGTTTCAAATTCTTGAGGAGAAGGATAATTTGGCATTATGTGCATTATTGGCCGGGTTCAATCAGAATGGAGATGCTGAAGAAGGCCTTAGAATTTGTACTGATTTTCTTTCTGAAGGTAATCTGCCAGACCCATTTACTTGTGCAAGTATTGTTAGTTTGTGTTCAAATCTGAAGACAGAGCTTGCTGGTACCCAAGTTCACTGTAATTTAATCAAACTGGGGTTTATGATGGACTCACATCTGGGTAGTGCCTTTATCAATATGTATGGAACCTTTGGAATGATATCTGATGCTTATAAATGTTTCCTTGAGGTTTCTTATAAAAATGAAATCTGCATAAGTGCCATGATCAATACTTTAGTTCTAAATTCAAATGACGAAAAAGCTCTAGATCTATTTTGTTGGATGAGGGAAGCTGGTGTTGTAACAAGCAAATCTACAATCAGCTATATTCTACGAGCTTGTGGGAACCTTTGTAGACTTAAAGACGGAAGATCTTTCCATTCTTACATTATTAAAAGCCCTAGTGAAGATGACTCTACGTTGGGATTAGAAAATGCTCTTCTAGAGATGTATTCAAGATGTGGAGCCATTGATGATGCAAAATTGGTTTTTAATGAGATGCAATTGCACAATGAGTTTTCCTGGACTACTGTCATATCTGGATGCAGTGAATCAGGACAATTTGCAGAAGCTTTTGTGCTGTTCCGTGATATGCTTTTTTATACAATATCTTCAAAACCTAGTCAGTTTACCTTGGTTAGCGTTATTCAGGCTTGTGCAGTAACAGAGGCACTTGATTTAGGAAAACAAGTCCATTCTTATATTATAAAGGCAGGATTTGAATATTATCCCTTCATTGGAAGTGCTCTGATGAACATGTATGCTGTATTCAAACATGAAACTTTGAATGCTTTTCTGGTATTCTCGTCCATGAAAGTCCACGATCTTATCTCTTGGAGCATCATGTTAACTTCCTGGGTCCGAAATGGTTATTATGAAGAAGCTATTAAGCTTTTTAAAAATTTCCAAACTTTTCCCCTTTTTCAGGTTGATGAGTCCATCTTAGCCAGCTGTCTCTCGGCTACTGCTGGCTTAGCAGCATCAGAGCTTGGCAAATGTTTCCATTCCTGGGTTACCAGACTTGGCTTTGAAAATGATCTTCAGGTAGCTTCTTCCATTATAGACATGTATAGTAAATGTGGAAATATTGAAGATGCCCGTAAATTTTTCAATTCTATCAGCAACCACAATTTTGTATCTTGGACAGCTATGATATATGGATACGCTTTTAATGGGCTGGGGAAAGAAGCTATTGACCTGTTTAATGTGGCTAAAAAAGCTGGGTTGGAACCTGATGGTGTCACGTTCTCTGGGGTTTTGACTGCATGTAGTCATGCTGGACTAGTGCTGGAAGGCTGGGAACTTTTTGAGTACATGAGAAGTGAAAACAACTGCCAAGTAACAATATATCATTATGCCTGCATGGTTGATCTTCTTGGTCGAGCTGCAGAATTGGAAGGAGCAGAGGCATTGGTAAAGAAATCTCCATTTCATTCAAAAGCTCTTCTATGGAAGACATTGCTGGGTGCTTGCTATAAACATGAGAATGCTGAATTAGGAATTCAAATATCAAAGATGCTTGCCGATATAGAATTGAATGAACCCTCAACCTATGTTCTACTATCTAACATCTATGCATCAGCTTCAATGTGGAAAAATTCCACGGAAGTCAGAAACAAAATGGTAGAGTGGAATGTTAATAAGCAACCTGGTAGTAGTTGGATTCAGGTGGCAAGTTAG 2700 0.3948 MSISGTSFLNSSKKGLLVRKFHLQRSSEPQKNDGIRFQDCVLLLQHLRDNEDVNYGRSLHSFFIKSGLDRDVFVQNNMMRFYGNTCGDLKNAHLLFDEIPEPSLISWTSLVSSYVHDGQHEIGLHLFSLLCRTVLRPNEFGFSVALKACRVMRDPVMGRLIHGLIIKSGFESHSFCSASIIHMYAESGDIENSRKLFDGITLGERSEALWNTLLNAYVQMSDAEGALRLFHKMRHSAISPSCFTYTILVKLCAVVFNFELGRCIHGQTVKVGIENDVVVGGALVDTFSRLGVLTDACRVFQILEEKDNLALCALLAGFNQNGDAEEGLRICTDFLSEGNLPDPFTCASIVSLCSNLKTELAGTQVHCNLIKLGFMMDSHLGSAFINMYGTFGMISDAYKCFLEVSYKNEICISAMINTLVLNSNDEKALDLFCWMREAGVVTSKSTISYILRACGNLCRLKDGRSFHSYIIKSPSEDDSTLGLENALLEMYSRCGAIDDAKLVFNEMQLHNEFSWTTVISGCSESGQFAEAFVLFRDMLFYTISSKPSQFTLVSVIQACAVTEALDLGKQVHSYIIKAGFEYYPFIGSALMNMYAVFKHETLNAFLVFSSMKVHDLISWSIMLTSWVRNGYYEEAIKLFKNFQTFPLFQVDESILASCLSATAGLAASELGKCFHSWVTRLGFENDLQVASSIIDMYSKCGNIEDARKFFNSISNHNFVSWTAMIYGYAFNGLGKEAIDLFNVAKKAGLEPDGVTFSGVLTACSHAGLVLEGWELFEYMRSENNCQVTIYHYACMVDLLGRAAELEGAEALVKKSPFHSKALLWKTLLGACYKHENAELGIQISKMLADIELNEPSTYVLLSNIYASASMWKNSTEVRNKMVEWNVNKQPGSSWIQVAS 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1358 899 Pfam PPR repeat 691 715 IPR002885 -
Dere07g1358 899 Pfam PPR repeat 105 129 IPR002885 -
Dere07g1358 899 Pfam PPR repeat 617 640 IPR002885 -
Dere07g1358 899 Pfam PPR repeat 485 508 IPR002885 -
Dere07g1358 899 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 615 897 IPR046960 GO:0003723|GO:0009451
Dere07g1358 899 FunFam pentatricopeptide repeat-containing protein At2g33680 690 899 - -
Dere07g1358 899 Gene3D Tetratricopeptide repeat domain 481 543 IPR011990 GO:0005515
Dere07g1358 899 Gene3D Tetratricopeptide repeat domain 544 682 IPR011990 GO:0005515
Dere07g1358 899 Gene3D Tetratricopeptide repeat domain 685 899 IPR011990 GO:0005515
Dere07g1358 899 Gene3D Tetratricopeptide repeat domain 156 259 IPR011990 GO:0005515
Dere07g1358 899 Gene3D Tetratricopeptide repeat domain 364 480 IPR011990 GO:0005515
Dere07g1358 899 Gene3D Tetratricopeptide repeat domain 260 363 IPR011990 GO:0005515
Dere07g1358 899 Gene3D Tetratricopeptide repeat domain 20 155 IPR011990 GO:0005515
Dere07g1358 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 717 751 IPR002885 -
Dere07g1358 899 Pfam E motif 834 896 IPR046848 -
Dere07g1358 899 Pfam PPR repeat family 511 560 IPR002885 -
Dere07g1358 899 Pfam PPR repeat family 209 252 IPR002885 -
Dere07g1358 899 Pfam PPR repeat family 717 764 IPR002885 -
Dere07g1358 899 NCBIfam pentatricopeptide repeat 719 752 IPR002885 -
Dere07g1358 899 NCBIfam pentatricopeptide repeat 209 242 IPR002885 -
Dere07g1358 899 NCBIfam pentatricopeptide repeat 754 786 IPR002885 -
Dere07g1358 899 NCBIfam pentatricopeptide repeat 513 539 IPR002885 -
Dere07g1358 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Dere07g1358 899 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1358 Dere-ChrDere07 17738198 17740897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1358 211 898 Glycoside Hydrolase AT3G49170 32.386 2.67e-115 370