LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g1333	ATGAGCAGGTATCTGGGTTTAGCCTTTTACATCACCATATCCTGCATCGCCTTTGGCATATCCAAGATTGTTATATCAGTCCTCCTCTACAAAAGATGGAAAAGAAAGCACATGATTAACGAAGAAGGCTATGCAGGTGGGAAGATCGTAATATTCAGGTCTTCAGTTCTTCAATCCCTCACATCTGAGATGGTCTTGAAGAAGACGCTGAAACTGAATAACATGGACATCATTGGATCTGGTGGTTATGGGACAGTTTATAAACTGAAAATAGATGACTCCAAAGCCGTTGCTGTGAAAAGACTGAACAGAGGAACTGCAGATAGAGACAGGGGATTTGAGAGAGAGCTGGAAGCAATGGCAGACATAAAACACCGCAATATTGTAACTCTTCATGGATATTATACTGCTCCACACTACAACCTTCTCATATATGAGCTAATGCCCAATGGAAATCTGGATACTTTCCTTCACGGAAGACCAGAGCCCATGAAAATTTTAAATTGGTCATCGAGATACAGAATAGCTATAGGTGCTGCTAGAGGAATATCATATCTTCACCATGATTGCATCCCTCACATAATCCACAGAGATATCAAGCCAAGCAATATATTGCTGGACAAAAACCTGGAGGCCCGAGTTTCTGATTTTGGATTAGCCACATTGATGGAACCAAACAGAACCCATGTTTCAACAACTGTGGCTGGAACTTTTGGATACTTAGCTCCTGAATATTTTGATACCGGAAGAGCAACATTCAAAGGGGATGTCTACAGCTATGGAGTTGTACTATTGGAGCTTTTAACTGGGAAAAGACCCAGTGATGAAGCATTTATGGAAGAAGGAACCCAGCTTGTCACATGGGTGAAGGCTATTGTTCAAGAAAAGAAGGAGGAACTAGTTCTCGACGATAGGCTAGAGTCCTATCAAATGGAAGAAGTTAACAATGTGTTCAACATTTCAATGATGTGTCTTGAATCTGACCCCTTGAAGAGGCCAACAATGGCTGAAGTTGTCAACTTACTCGAGCAAAGAAAGCCAGACAAACTTGCCACAGCTTCCTGA	1065	0.4169	MSRYLGLAFYITISCIAFGISKIVISVLLYKRWKRKHMINEEGYAGGKIVIFRSSVLQSLTSEMVLKKTLKLNNMDIIGSGGYGTVYKLKIDDSKAVAVKRLNRGTADRDRGFERELEAMADIKHRNIVTLHGYYTAPHYNLLIYELMPNGNLDTFLHGRPEPMKILNWSSRYRIAIGAARGISYLHHDCIPHIIHRDIKPSNILLDKNLEARVSDFGLATLMEPNRTHVSTTVAGTFGYLAPEYFDTGRATFKGDVYSYGVVLLELLTGKRPSDEAFMEEGTQLVTWVKAIVQEKKEELVLDDRLESYQMEEVNNVFNISMMCLESDPLKRPTMAEVVNLLEQRKPDKLATAS	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g1333	354	SMART	serkin_6	72	342	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g1333	354	Pfam	Protein kinase domain	74	340	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g1333	354	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	11	346	-	-
	Dere07g1333	354	ProSitePatterns	Protein kinases ATP-binding region signature.	78	100	IPR017441	GO:0005524
	Dere07g1333	354	ProSiteProfiles	Protein kinase domain profile.	72	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g1333	354	SUPERFAMILY	Protein kinase-like (PK-like)	56	344	IPR011009	-
	Dere07g1333	354	FunFam	Receptor-like serine/threonine-protein kinase	43	147	-	-
	Dere07g1333	354	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	15	-	-
	Dere07g1333	354	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	194	206	IPR008271	GO:0004672\|GO:0006468
	Dere07g1333	354	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	148	353	-	-
	Dere07g1333	354	Gene3D	Phosphorylase Kinase; domain 1	49	147	-	-
	Dere07g1333	354	Gene3D	Transferase(Phosphotransferase) domain 1	148	352	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g1333	Dere-ChrDere07	17397891	17401083	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g1333	27	344	Receptor kinase-like Gene Family	AT2G35620	48.910	1.42e-100	307

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIIIa	Dere07g1333		Pkinase	1.6e-50	CL0016