Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1320 ATGGATGCCAAATATCAAGGCTTACCTCCCCTCAAGAGATTGAGACTCATGCAACAGCAACAGGAGCTCCAGAATCAGATACAACATCACAATCACAAAACGCAAGAAGGCGCTGTCGTTTCCTGCTCAACCTTGCCGGCAAAGAAGCGTAAGGAATCGCGAGATTCAACATTTCTTCCTGACCCACCAGTTTCAATCTCTGCCAATGCTTATTCGCTTCCAGCTAAGAAAAGGGTATGGGCTCTTCAACCTGATTTTGCTTCCGATTCTGGTGTTTCCACTATTGACCTCAATGTTGAATACAAGCCATCGCTTGAGGAAGAGGTAAAATCAGTAGATGATGAACCCAATGATATTGGGATTTCATTGGTATCGAATTCTCAGAATGAAAGAGAAGATGATGATAATGATAATGTCAATAATGATGACGACGACGACGGGATTGTTTGTGCTGTATGTCAGAGCACAGATGGGGATCCAGCAGATCCAATTGTTCTGTGTGATGGGTGTGATCTAATGGTTCACGCCTCATGCTATGGCAACCCCCTTGTAAAGGGTATACCAGAAGGTGATTGGTTCTGTGAAAAATGCAAAGTTTCATCGTTTTCTCCATCTAAGAAAGAGGATGAAAATGTTATTTCTTGTTGTCTCTGTCCTACCAAGGAAGGGGCAATGAAACCCACCATAGATGAACGGTGGGCTCATGTTGTTTGTGCGCTTTTAGTCCCTGAAGTGTTTTTTGGGGACCCAGAAGGAAGAGAAGGCATTGATTGCTCAAAGGTTCCGAAGAAAAGGTGGTCGGAGAAGTGCTACATTTGTAAATCTTCAAATGGGTGTGCCATTGTGTGTTCTGAGCTCAAGTGTCCTTTGGCATTTCATGTCACTTGTGGGTTGAAAGAGGATCTCTGTATTGAGTACCAGGAAGGGAAGAAGAATGCAACTATCGTTGCTGGTTTCTGCCAAAGCCACACTGAACTGTGGAAAAAGCAACAGCAAACGGGGAAATACAAAATTGTCGCTGGAGAAAACAAATAG 1035 0.4367 MDAKYQGLPPLKRLRLMQQQQELQNQIQHHNHKTQEGAVVSCSTLPAKKRKESRDSTFLPDPPVSISANAYSLPAKKRVWALQPDFASDSGVSTIDLNVEYKPSLEEEVKSVDDEPNDIGISLVSNSQNEREDDDNDNVNNDDDDDGIVCAVCQSTDGDPADPIVLCDGCDLMVHASCYGNPLVKGIPEGDWFCEKCKVSSFSPSKKEDENVISCCLCPTKEGAMKPTIDERWAHVVCALLVPEVFFGDPEGREGIDCSKVPKKRWSEKCYICKSSNGCAIVCSELKCPLAFHVTCGLKEDLCIEYQEGKKNATIVAGFCQSHTELWKKQQQTGKYKIVAGENK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1320 344 Pfam PHD-zinc-finger like domain 214 323 - -
Dere07g1320 344 Pfam PHD-finger 149 199 IPR019787 -
Dere07g1320 344 ProSiteProfiles Zinc finger PHD-type profile. 147 200 IPR019787 -
Dere07g1320 344 MobiDBLite consensus disorder prediction 107 143 - -
Dere07g1320 344 Coils Coil 13 33 - -
Dere07g1320 344 PANTHER PHD FINGER PROTEINS 53 324 - -
Dere07g1320 344 SMART PHD_3 269 324 IPR001965 -
Dere07g1320 344 SMART PHD_3 149 198 IPR001965 -
Dere07g1320 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 204 IPR013083 -
Dere07g1320 344 ProSiteProfiles Extended PHD (ePHD) domain profile. 212 324 IPR034732 -
Dere07g1320 344 SUPERFAMILY FYVE/PHD zinc finger 136 200 IPR011011 -
Dere07g1320 344 CDD PHD_BRPF_JADE_like 149 197 - -
Dere07g1320 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 326 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1320 1 342 C2H2 Transcription Factor Family AT3G14740 56.022 1.66e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere07g1320 zf-HC5HC2H_2 1.2e-29 CL0390