Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere07g1309 | ATGGTGAGACTAAGGTGCTTCTTGGACATTAACATAGGGGATCAGCTTGAAGGGAGGATTATGGTTAAGCTCTTCAATGACATCACTCCCAAGATTGTTGAGAATTTTAGGGCTCTCTGCACCGATGAGAAGGGCATTGGTCCTAATACTGGGGTGCCCCATTATTTCAAGGGTTCTTGCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAAGAGATATATCTACTGGAGATGGTACTGAAGGAGAGTCTATATATGGAATGAAGTTTAAAGATGAGGAGTTCAAGTTAAAGCATAAAAGGAAAGGGATGCTATCTATGGCCAATACTGGAATGGATGTGGTCCATTCGATTGAGCATGTGACAACTAGTGGCAATGATCATCCCACTCTTGATGTTAAAATTATGGATTGTGGAGAAATCCTTCAAGGAGTAGATGATGGAATATCCAACTTTTTCAAAGATGGTGATACTTATCTTGATTGGAGGATGAATGTTGTAGACTCCATTAAATCTTTTGGTAATGAGTACTACAAGAAACAATACTACAAAATGGCTCTAAGGATGTATCGAAAGGCCTTACACTACCTGGATATTTGCTAG | 606 | 0.3927 | MVRLRCFLDINIGDQLEGRIMVKLFNDITPKIVENFRALCTDEKGIGPNTGVPHYFKGSCFHRVIKGFMIQGRDISTGDGTEGESIYGMKFKDEEFKLKHKRKGMLSMANTGMDVVHSIEHVTTSGNDHPTLDVKIMDCGEILQGVDDGISNFFKDGDTYLDWRMNVVDSIKSFGNEYYKKQYYKMALRMYRKALHYLDIC | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere07g1309 | 201 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 7 | 147 | IPR002130 | GO:0000413|GO:0003755 | |
| Dere07g1309 | 201 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 5 | 147 | - | - | |
| Dere07g1309 | 201 | Gene3D | - | 161 | 201 | - | - | |
| Dere07g1309 | 201 | Gene3D | - | 112 | 147 | IPR029000 | - | |
| Dere07g1309 | 201 | SUPERFAMILY | Cyclophilin-like | 3 | 144 | IPR029000 | - | |
| Dere07g1309 | 201 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 8 | 112 | IPR002130 | GO:0000413|GO:0003755 | |
| Dere07g1309 | 201 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 104 | 119 | IPR002130 | GO:0000413|GO:0003755 | |
| Dere07g1309 | 201 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 24 | 39 | IPR002130 | GO:0000413|GO:0003755 | |
| Dere07g1309 | 201 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 61 | 73 | IPR002130 | GO:0000413|GO:0003755 | |
| Dere07g1309 | 201 | Gene3D | - | 2 | 111 | IPR029000 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere07g1309 | Dere-ChrDere07 | 16968498 | 16969196 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere07g1309 | 18 | 112 | U-box Gene Family | AT5G67530 | 46.875 | 1.68e-16 | 75.1 |