Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1302 ATGAAGATTCAGTGCAACGTGTGTGAGGCGGCGGAGGCGGAGATTCTGTGCTGTGCGGACGAGGCGGCGCTATGTCGGCAATGTGACGAGAAGGTTCATGCAGCTAACAAGCTAGCCACCAAGCACCAGAGGGTTCCTCTGTCTACCTCTTCCTCTCACATGCCGAAATGTGATATTTGTCAGGATACAGTTGGCTATTTCTTCTGTCTTGAGGACCGAGCTTTACTTTGTAGAAAGTGTGATGTGGCAATACACACAGCAAATTCCTATGTCTCCACTCATCAGAGGTTTCTGCTCACTGGTGTAAGAGTGGGTCTTGAAGCTACTGAACCTGTTGCTTCCCTGTCCCCTGTGAAGTCTCATTCTGGGGGGAAAATATCAGATACAATATCTTCTTCTGTCTCTAAGAAGGTTTCTTCAATGCCTCAGTCATCTGAATACAATGAATTGTTACCTATCCAAGTTGGAGGAGTTGGAGAGTTTCAACCAATTGAAGTGTCTTATGGTGGTGGTTCTACAGCAGACATCTCAAATTGGCCCCTTGAGGAATTTTTTGGGCTGACTGAATTCAGTCAGAATTATAATTTCACAGATAATGGACCTGCCAAGGCTGACAGTGGTAAGCTTGGGGATTCTGATTCTTCTGTTTTAAGATCCAGTGAAGAGGAAATGGATAATGATGATCACTTGGGCTGGGTTCCTGATTCATCTTGGACAGTACCTCAGATCCCTTCCCCGCCGACAGCCTCAGGTTTATATTGGCCGAAAGACCCTCGATATTCATCCGCTGATAGAACAATGTTTGTTCCTGACATATGCACTTCTCACATCCAACAGCCCTGGCATGTTCAGAAAAAAATTACATTATCAAAACGGAGGAGACAACTGTAG 891 0.4545 MKIQCNVCEAAEAEILCCADEAALCRQCDEKVHAANKLATKHQRVPLSTSSSHMPKCDICQDTVGYFFCLEDRALLCRKCDVAIHTANSYVSTHQRFLLTGVRVGLEATEPVASLSPVKSHSGGKISDTISSSVSKKVSSMPQSSEYNELLPIQVGGVGEFQPIEVSYGGGSTADISNWPLEEFFGLTEFSQNYNFTDNGPAKADSGKLGDSDSSVLRSSEEEMDNDDHLGWVPDSSWTVPQIPSPPTASGLYWPKDPRYSSADRTMFVPDICTSHIQQPWHVQKKITLSKRRRQL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1302 296 SUPERFAMILY B-box zinc-binding domain 45 94 - -
Dere07g1302 296 Gene3D Classic Zinc Finger 1 93 - -
Dere07g1302 296 CDD Bbox1_BBX-like 5 47 - -
Dere07g1302 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Dere07g1302 296 MobiDBLite consensus disorder prediction 198 226 - -
Dere07g1302 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere07g1302 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 - -
Dere07g1302 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Dere07g1302 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dere07g1302 296 FunFam B-box zinc finger protein 22 1 93 - -
Dere07g1302 296 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Dere07g1302 296 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1302 Dere-ChrDere07 16775812 16780587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1302 1 296 C2C2-CO-like Transcription Factor Family AT1G78600 44.478 1.40e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Dere07g1302 zf-B_box 1.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1302 07 16775812 16780587 Dere07g1302 07 16775812 16780587 ECH