Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1272 ATGTCTCTGAGAAACGTTTTTCGTTCTCGGAAATTTTCCAGATCCTTCAAGGAGGTTAGGGCCATCGAGGAAGATGAGCGGAAGGAGCTACTCAACGGTGACTCCGACGACAGAAACACGGCGGATTCCCCACCTTACGGCCAATCATGGTCCACTATGCTGCCGGAGCTTCTCGGAGAGATCATACGCCGTGTTGAGGCCACCGAGGACCAATGGCCCAACCGCCAAAACGTCGTCGCTTGCGCCTGCGTGTGCAAGAAGTGGAGGGACATCACCCAGGAGATCGTGAGCTCCCCTTCGCGCAACGGCGGCAAAATCACGTTTCCTTCTTGCCTCAAGCAGCCAGGGCCACGTGATTCACCCCACCAATGTATTATAAAGCGGAATAAGAAGACTTCAACATTTTACCTATATCTTGCCCTTACTCCACCATCATTCACAGATGAAGGTAAGTTTCTTTTGGCAGCTAGGAGATATAGGCGGGGTGCCCATACTGAATATTTGCTATCACTTGATGCTGATGACTTTTCCCAAGGAAGCAATGCCTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACCAACTTCACAATCTATGATAGCCAGCCGCCCCATTGTGGTGCAAGGCCATCAAATGGGAAGGCCAGCCGTCGTTTTACGTGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTTTCGTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTCACTGAAGTTCCCGCACCCATCATCAGGAGAAAGTTCAGATAGTAAATCTCTGGATGTTCATAAGACAAAGTATACAGAACATGTTGTCTTTGGATACTCACTCTTGAAAAACAAAGCTCCAAGGTGGCATGAGCATTTGCAATGCTGGTGCTTAAATTTCCATGGTCGTGTAACTGTAGCATCAGTGAAAAACTTTCAGCTGGTTGCTTTAGTGGACCAAAGCCAACCTGGAGGGAAGGGAGATGAGGAAACGGTTCTTCTTCAATTTGGTAAAGTGGGGGATGATACTTTTACCATGGATTACAGGAAGCCCCTTTCTGCCTTTCAGGCCTTTGCCATTTGCCTAACTAGCTTTGGCACAAAACTGGCTTGTGAATAA 1146 0.4799 MSLRNVFRSRKFSRSFKEVRAIEEDERKELLNGDSDDRNTADSPPYGQSWSTMLPELLGEIIRRVEATEDQWPNRQNVVACACVCKKWRDITQEIVSSPSRNGGKITFPSCLKQPGPRDSPHQCIIKRNKKTSTFYLYLALTPPSFTDEGKFLLAARRYRRGAHTEYLLSLDADDFSQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGARPSNGKASRRFTCKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKFPHPSSGESSDSKSLDVHKTKYTEHVVFGYSLLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVALVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRKPLSAFQAFAICLTSFGTKLACE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1272 381 CDD F-box_AtTLP-like 50 94 - -
Dere07g1272 381 ProSitePatterns Tub family signature 2. 366 381 IPR018066 -
Dere07g1272 381 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Dere07g1272 381 PRINTS Tubby superfamily signature 309 325 IPR000007 -
Dere07g1272 381 PRINTS Tubby superfamily signature 338 357 IPR000007 -
Dere07g1272 381 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Dere07g1272 381 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Dere07g1272 381 PRINTS Tubby superfamily signature 291 308 IPR000007 -
Dere07g1272 381 PRINTS Tubby superfamily signature 359 381 IPR000007 -
Dere07g1272 381 Pfam Tub family 112 376 IPR000007 -
Dere07g1272 381 SUPERFAMILY Tubby C-terminal domain-like 103 381 IPR025659 -
Dere07g1272 381 MobiDBLite consensus disorder prediction 27 50 - -
Dere07g1272 381 Gene3D Tubby Protein; Chain A 107 381 IPR025659 -
Dere07g1272 381 ProSitePatterns Tub family signature 1. 309 322 IPR018066 -
Dere07g1272 381 PANTHER TUBBY-RELATED 47 379 - -
Dere07g1272 381 Pfam F-box domain 55 96 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1272 Dere-ChrDere07 16402838 16407118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1272 49 381 TUB Transcription Factor Family AT1G53320 79.351 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere07g1272 Tub 3.7e-99 CL0395