Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1271 ATGAATGAACTTTCCTATACGATCATTTACCGAGAGGTTCCAGAAAACCCAGATTGTTTTTGTCTGGGATTAGGGTTTAAAGTTATCCTGAAGGAGAGGGGTGTTTTCGAGAGAGAGAGAGTCAAGGAGACGAAAATGGCAGGGATTGGACCACTTACACAGGATTGGGAGCCAGTGGTGATCCGGAAGAAGGCACCAACTGCGGCTGCGAAGAAGGATGAGAAAGCTGTCAACGCCGCTCGTCGCGCCGGTGCCGATATTGAAACCGTGAAAAAATCAAATGCTGGGACAAATAAAGCTGCCTCAAGCAGCACTTCTTTGAACACAAGGAAGCTTGATGATGAAACTGAGAATCTTCATCACGAACGAGTACCAACTGAATTGAAGAAAGCCATCATGCAGGCTAGGATGGAGAAAAAACTTACCCAGGCTCAACTGGCTCAGGTGATAAATGAGAAGCCTCAAGTTATTCAAGAGTATGAATCAGGTAAAGCCATTCCAAATCAGCAAATATTAGGTAAACTGGAGAGAGCTCTTGGTGCAAAACTGCGTGGAAAGAAATGA 564 0.4504 MNELSYTIIYREVPENPDCFCLGLGFKVILKERGVFERERVKETKMAGIGPLTQDWEPVVIRKKAPTAAAKKDEKAVNAARRAGADIETVKKSNAGTNKAASSSTSLNTRKLDDETENLHHERVPTELKKAIMQARMEKKLTQAQLAQVINEKPQVIQEYESGKAIPNQQILGKLERALGAKLRGKK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1271 187 MobiDBLite consensus disorder prediction 88 117 - -
Dere07g1271 187 Pfam Multiprotein bridging factor 1 54 124 IPR013729 -
Dere07g1271 187 SUPERFAMILY lambda repressor-like DNA-binding domains 126 183 IPR010982 GO:0003677
Dere07g1271 187 ProSiteProfiles Cro/C1-type HTH domain profile. 132 186 IPR001387 -
Dere07g1271 187 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 48 187 - -
Dere07g1271 187 FunFam Multiprotein bridging factor 1 116 187 - -
Dere07g1271 187 SMART mbf_short4 131 186 IPR001387 -
Dere07g1271 187 Coils Coil 132 152 - -
Dere07g1271 187 MobiDBLite consensus disorder prediction 91 109 - -
Dere07g1271 187 Gene3D - 116 187 IPR010982 GO:0003677
Dere07g1271 187 Pfam Helix-turn-helix 132 182 IPR001387 -
Dere07g1271 187 CDD HTH_XRE 130 180 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1271 Dere-ChrDere07 16391209 16396375 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Dere07g1271 MBF1 6.1e-24 No_clan