Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1250 ATGGCAGCCATCATCTTGCCTTGTGAAAAGAACGTCTACATGGCCAAGCTTGCCAAGCAGGCCGAGCATTATAAAGAGGTGGTTAGGTTCATGGAAAAGGTCTCCGTCATCATTGACAATGGAGAACTTACCGTTGAAGAGAGAAACCTCCTCTCTATTACCTACCAAAACGTCATCGGTGCCCGCCGTGCCTCATGGCGTATCATTTCCTCCATCGAACAGAAGGAAGAGGACCCAGGGTGTTCTTCATTGTCATATACACAAATAGGAAATAAATCAAGAGGGAGAGAGACTGCAGTAGTTGGCATGTATCAAACTCGAGAGTTATTTCATCCCCCTCATTTTGCTTCAGCCATTTCTAGTTCACCATTTCATGTTTCTTCTTTCTACTTTGCAATTTCTCTTCTTAGTAGCACCCTTTTCTGTCATCATCATTATGGGTTGCTAGTAGAGCACTTCTTGCCATCAAACACCACACCGGCCCTCATTCAAGCTGACATTGCTCTAACAAGCCTTCATCTCCCTCCATTTGATGCCTTTCAACCATCCTTGTTAGCGATACTGTTGAAGCTTACTGGCATTCCAGCTATACCACTAGCATTTTCTTCACTGGTAGCACTTCAGCTCGACACTAGCCCGGGTGAATCAGTAATCGATCGAACGCTTGATCCTTTTCCGCTTCAGTTAGTGAGAGAAGGGCCTCTCTATCTCTCTCTCAAAACCCTATTGCGTGATTTGCAATCGACCTCGAGAATGGCCAACAGCAATCTCCCTCGAAGAATCATCAAGGAAACTCAGCGTCTTCTCAGTGAGCCAGCACCTGGAATTAGTGCTTCACCTTCAGAAGACAATATGCGATATTTCAATGTGATGATCCTTGGGCCAACACAGTCACCTTATGAAGGAGGGGTTTTCAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCACCTAAGGTTAGGTTTCTGACAAAAATATATCATCCAAATATTGATAAGCTTGGAAGGATATGTCTTGATATTCTGAAAGATAAGTGGAGTCCTGCTCTTCAGATACGCACTGTTCTTTTGAGTATTCAAGCGCTTCTGAGTGCACCAAACCCAGATGATCCACTTTCTGAGAACATTGCCAAGCATTGGAAAACGAATGAGGCTGAGGCTGTTGAAACAGCAAAAGAATGGACCCGACTATATGCTAGTGGTGCCTGA 1215 0.4428 MAAIILPCEKNVYMAKLAKQAEHYKEVVRFMEKVSVIIDNGELTVEERNLLSITYQNVIGARRASWRIISSIEQKEEDPGCSSLSYTQIGNKSRGRETAVVGMYQTRELFHPPHFASAISSSPFHVSSFYFAISLLSSTLFCHHHYGLLVEHFLPSNTTPALIQADIALTSLHLPPFDAFQPSLLAILLKLTGIPAIPLAFSSLVALQLDTSPGESVIDRTLDPFPLQLVREGPLYLSLKTLLRDLQSTSRMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1250 404 Gene3D Ubiquitin Conjugating Enzyme 247 403 IPR016135 -
Dere07g1250 404 SMART 1433_4 9 252 IPR023410 -
Dere07g1250 404 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 329 344 IPR023313 -
Dere07g1250 404 SUPERFAMILY 14-3-3 protein 8 79 IPR036815 -
Dere07g1250 404 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 284 389 - -
Dere07g1250 404 Pfam 14-3-3 protein 14 80 IPR023410 -
Dere07g1250 404 Pfam Ubiquitin-conjugating enzyme 260 396 IPR000608 -
Dere07g1250 404 SUPERFAMILY UBC-like 255 402 IPR016135 -
Dere07g1250 404 Gene3D - 5 100 IPR036815 -
Dere07g1250 404 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 256 402 IPR000608 -
Dere07g1250 404 CDD UBCc 258 397 IPR000608 -
Dere07g1250 404 SMART ubc_7 259 402 - -
Dere07g1250 404 FunFam Ubiquitin-conjugating enzyme E2 36 252 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1250 Dere-ChrDere07 16185120 16195743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1250 9 80 14-3-3 family AT1G78300 76.389 2.65e-30 115