Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1248 ATGTCGCATTCTGGGAAGCCCATTTCCGAGGTAGGGTTCGATGCTCTCAACGATCAATTCCGTGAGTCCTTAAGCTGCGAGGCTAACAAGCCGGATTTTCGTGAACTCGATTTGGGCTCGCCGGTTTCGCCATTGCGGACTCGTCAGAGTGTACTTAATGCCAGTGGACTCACCACTACCAGTAGTAGTTCCAGTTCATCCGGATCGGTCTCCGGACGAAACGGGTGCAATCCGGTCGCGAAACGATCCGATTCCGATCGGAACAACCACTCCGGCGAGCTTTCCGGCTCCAGCGATAACAGTCCGACCGCCGCAGAGAGCCTACGATCTACAGGGAATGCTAGGAATTTCAAATCGCCCCAAGCAAGATCAGATTGCGCTACCACTCAGCCGTTAATTTATTCGGGTCAAAGCTCCTCCGTGAATTCTCCGCCGCCGAATATTCTTCCAGCAGGCAACATCTGCCCCTCCGGCAGGATTCTGAAGAGCGTGGCTGCCTCGGCCAATCGGAGCTCTAGGACTGATGTTTTGGGTTCCGGGATGGGAAATTACGGCCATGGAAGCATAATGCGGGGCGGTACGGCTTCCAAAGGCAGTGCCGGAGAGGCGGCCTGTGTGGCGAATGCGAGGACGAGCAGTAGTGGCGGCGTCAATGACCCAGTGAAGCGAGCGATGGTGAGTATGGATCCAGAAGAGGTCAAGAGAGCAGGGAACGAGCAGTACAAGAGGGGTCATTTCACAGAGGCACTGAGTCTATACGATCGAGCAATTGCATTATCCCCCGCCAACGCAGCCTACCGGAGCAACCGTGCAGCTGCATTGACTGGTTTGGGGCGGTTGGCTGAGGCAGTCAGGGAATGTGAGGAGGCTGTGAGGTTGGACCCTAAGTATGGAAGGGCACATCAGCGTTTGGCTTCTCTTTTATTACGGTTAGGGCAAGTTGAGAATGCCAGGGAGCACCTCTTCTGCCCTGCGCTGCCGCCTGATCCTTTTGAGTTGCAGAAACTGCAATTAGTGGAGAAGCATATCAGAAAATGTACAGATGCCCGGAGGGTAGGTGATTGGAAAAGTGTACTCAGGGAAATTGACGCTGCCATTGCTTCTGGAGCAGACTCCTGTCTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTATTGAAGCTCCACCATATTGATGATGCAGAAGTGAGTCTGTTAAACAATCCCAAATTGGAACTACATACTAATTCCTCTTCACAGGCAAGATTTTTTGGGATCCTTTCTGAAGCTTACTCTTTCTTTGTCAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTTGAGAATGCAGTTGCAGCTGCTGAGAAAGCTGGTCAGATTGATCCACGAAACATTGAAGTTGCTGTTTTGCTAAAAAATGTAAGGATGGTGGTGAGGGCTCGAGCACGAGGCAATGATCTTTTCAAATCCGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGCTGGACCCTTCAAACTCTGTTCTTTACTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCAATGGGAACGATCAATTGAAGATTGCAATCAAGCTTTACATATCCAACCAAATTACACAAAAGCCCTTCTTCGAAGGGCTGCATCTAACAGCAAGTTAGAAAGGTGGGCAGAAGCAGCCAAAGATTATGAAGTCTTGCGAAGAGAGCTTCCAGATGACAATGAAGTAGCTGAAGCTCTGTTTCATGCACAAGTGGCATTAAAGAAATCTCGTGGAGAAGAAGTGCGTGATTTGAAATTTGGTGGCGAAGTGGAAGAAGTATCAGGTCTAGAGCAATTTAGAGCAGCAATATCATTACCTGGTGTTTCTGTTGTCCATTTTGAAATTGCATCCAATCCGCAATGCAAGCAAATTTTGCCATTTGTGGGTACACTTTGTGGTCGCTATCCTTCTATTAACTTCCTCAAGGTGGATATTCAAGAATGCCCAACAGTTGCAACTGCTGAGAGCGTTAGAATTGTACCAACATTCAAGATCTACAAGAATGGCAGTCGTGTGAAGGAAATTGTATGCCCTAGTCGCGACATGTTGGAACAATCTGTGAGGCATTACAGTTTTTAG 2109 0.4884 MSHSGKPISEVGFDALNDQFRESLSCEANKPDFRELDLGSPVSPLRTRQSVLNASGLTTTSSSSSSSGSVSGRNGCNPVAKRSDSDRNNHSGELSGSSDNSPTAAESLRSTGNARNFKSPQARSDCATTQPLIYSGQSSSVNSPPPNILPAGNICPSGRILKSVAASANRSSRTDVLGSGMGNYGHGSIMRGGTASKGSAGEAACVANARTSSSGGVNDPVKRAMVSMDPEEVKRAGNEQYKRGHFTEALSLYDRAIALSPANAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPKYGRAHQRLASLLLRLGQVENAREHLFCPALPPDPFELQKLQLVEKHIRKCTDARRVGDWKSVLREIDAAIASGADSCLQLFMCRAEALLKLHHIDDAEVSLLNNPKLELHTNSSSQARFFGILSEAYSFFVRAQIEMALGRFENAVAAAEKAGQIDPRNIEVAVLLKNVRMVVRARARGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALHIQPNYTKALLRRAASNSKLERWAEAAKDYEVLRRELPDDNEVAEALFHAQVALKKSRGEEVRDLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEIASNPQCKQILPFVGTLCGRYPSINFLKVDIQECPTVATAESVRIVPTFKIYKNGSRVKEIVCPSRDMLEQSVRHYSF 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1248 702 SUPERFAMILY Thioredoxin-like 505 700 IPR036249 -
Dere07g1248 702 Gene3D Glutaredoxin 595 701 - -
Dere07g1248 702 MobiDBLite consensus disorder prediction 27 126 - -
Dere07g1248 702 Pfam Tetratricopeptide repeat 504 535 IPR001440 GO:0005515
Dere07g1248 702 Pfam Thioredoxin 608 696 IPR013766 -
Dere07g1248 702 MobiDBLite consensus disorder prediction 43 82 - -
Dere07g1248 702 CDD TRX_family 607 697 - -
Dere07g1248 702 MobiDBLite consensus disorder prediction 90 126 - -
Dere07g1248 702 Pfam Tetratricopeptide repeat 236 296 - -
Dere07g1248 702 SUPERFAMILY TPR-like 230 455 IPR011990 GO:0005515
Dere07g1248 702 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Dere07g1248 702 Gene3D Tetratricopeptide repeat domain 228 588 IPR011990 GO:0005515
Dere07g1248 702 ProSiteProfiles TPR repeat profile. 422 455 IPR019734 GO:0005515
Dere07g1248 702 SMART tpr_5 264 297 IPR019734 GO:0005515
Dere07g1248 702 SMART tpr_5 230 263 IPR019734 GO:0005515
Dere07g1248 702 SMART tpr_5 422 455 IPR019734 GO:0005515
Dere07g1248 702 SMART tpr_5 502 535 IPR019734 GO:0005515
Dere07g1248 702 SMART tpr_5 536 569 IPR019734 GO:0005515
Dere07g1248 702 SMART tpr_5 468 501 IPR019734 GO:0005515
Dere07g1248 702 ProSiteProfiles TPR repeat profile. 502 535 IPR019734 GO:0005515
Dere07g1248 702 FunFam TPR repeat-containing thioredoxin TTL4 594 701 - -
Dere07g1248 702 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 20 699 IPR044534 -
Dere07g1248 702 Pfam Tetratricopeptide repeat 424 454 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1248 Dere-ChrDere07 16177014 16180258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1248 467 612 U-box Gene Family AT3G07370 29.508 8.13e-11 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0360 08 6058592 6065055 Dere07g1248 07 16177014 16180258 CCT
Dere07g1248 07 16177014 16180258 Dere08g0624 08 9448957 9452015 CCT
Dere07g1248 07 16177014 16180258 Dere07g1248 07 16177014 16180258 ECH