Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1242 ATGGATCCCACTAAGAAGCGAAAGCTCGACGACAACGGCGTCGTTCCTCCCGATTCCGATTTGACCCTCACTCCTTCCGACGCACGCAAAATCATCGAGCGCTTCGGTCCCGAGCAGCTCATCGATATTCTCCAGGAAGCCGTCGTCCGCCACGGCGACGTCCTCGACGCCGTGCGGTCTATTGCGGACCCTGATGTCACCCAGCGTAAGTTGTTTATCCGTGGTCTTGGGTGGGAGACCACCACTGACGGCCTCCGCTCCCTCTTTTCCACCTACGGTGAGCTTGAAGAAGCTATTGTGATTCTTGATAAGGCCACCGGTAAGTCTAAGGGTTACGGGTTTGTCACCTTTAAGCACGTTGATGGCGCTTTGCTTGCGTTAAAGGAGCCCAGCAAGAGGATAGATGGTCGTGTCACTGTAACACAGCTTGCGGCGGCCGGGAATACGGGATCAAATACGAATGCTGCTGACATCGCGTTGCGTAAGATATATGTTGCTAATGTGCCGCCTGATCTGCCGGCCGATAAATTGTTGGCTCACTTCTCACTTTATGGGGAGATTGAGGAGGGGCCGTTAGGGTTTGATAAGCAGACCGGTAAGTCGAAGGGCTTTGCTCTTTTTGTGTACAAGACGCCGGAGGGGGCACAATCAGCACTTGTGGATCCGGTGAAGATGGTTGAGGGAAGGCAACTAAATTGCAAGCTGGCGATAACTGATGGGAAGCAAGGGAAACGAGGAGGTGCTGGACCAATGGGACCTGATGGGATGCAGGGTCCTGGGAATGCTCATGGGGATGGAATGGGTATGGCTCCACCGTCGTCCATGCCAGGGTCGCTTTCAGGTCAATATGGTGGCCCAGTGGGCCTTGGATCATATGGGGGTTACGGAAGTGGGCTTCAGGGTCAGCCACCACTGGGGAGTCATCCTCTGAATTCGTCTGTGGGTGGCACAGGGTTGTCTTCTGTAGGTAATCAGGCGCCCTCTTCTCTAGGAGGTACTGGCGGGTACAGTTCTGGTCTGGGAGGTCCCTACGGGGGCTATAGTGGGCCTGGCTCGACTGGCTATGGTGCATTGGGGGCCGGTGGTGCTGCAGGTTTGGGAGGTGGGGGTGGTGGATTAGGTGCTGGTGGACTCGGTGGTTCTGGTGGTGGATTGGGTGGCGCTGCATCATCAGCCTACTGGAGCGTCACCTGTACCTAG 1200 0.56 MDPTKKRKLDDNGVVPPDSDLTLTPSDARKIIERFGPEQLIDILQEAVVRHGDVLDAVRSIADPDVTQRKLFIRGLGWETTTDGLRSLFSTYGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADIALRKIYVANVPPDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQSALVDPVKMVEGRQLNCKLAITDGKQGKRGGAGPMGPDGMQGPGNAHGDGMGMAPPSSMPGSLSGQYGGPVGLGSYGGYGSGLQGQPPLGSHPLNSSVGGTGLSSVGNQAPSSLGGTGGYSSGLGGPYGGYSGPGSTGYGALGAGGAAGLGGGGGGLGAGGLGGSGGGLGGAASSAYWSVTCT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1242 399 MobiDBLite consensus disorder prediction 304 326 - -
Dere07g1242 399 SMART rrm1_1 70 142 IPR000504 GO:0003723
Dere07g1242 399 SMART rrm1_1 162 234 IPR000504 GO:0003723
Dere07g1242 399 MobiDBLite consensus disorder prediction 1 20 - -
Dere07g1242 399 Gene3D - 56 152 IPR012677 -
Dere07g1242 399 SUPERFAMILY RNA-binding domain, RBD 155 265 IPR035979 GO:0003676
Dere07g1242 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Dere07g1242 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Dere07g1242 399 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Dere07g1242 399 MobiDBLite consensus disorder prediction 239 264 - -
Dere07g1242 399 MobiDBLite consensus disorder prediction 294 326 - -
Dere07g1242 399 Gene3D - 153 270 IPR012677 -
Dere07g1242 399 PANTHER GEO13361P1-RELATED 52 335 - -
Dere07g1242 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Dere07g1242 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Dere07g1242 399 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1242 Dere-ChrDere07 16042139 16043436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1242 157 277 C2H2 Transcription Factor Family AT2G19380 35.537 5.12e-11 62.4