Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1229 ATGGCCATGATTTTAAGAAATGCTGCAGCAGGTGATGATATTGCTGAAAACTCTGAGCATTTTGAGGGCATAATAGGAGCCATTGTAGATGGCAGTTCTCGCAGTGGTAAAGAGCAGATAGTGGCTATGAAGATGGCACTCCAGGATTTCTACCATTACAGCAATCAAAGCTTTGCTCTGCACATAATGAACTCTCAAGGGAATGATTCCCTTCAAGCTGCTTTTGCAGCTAAAGTTCTAATTGATGAACAAAAGGTGGAAGCCATTATAGGACCAGAGACATGGGAAGAGACATCTTCAGTGGCTGAGGTTTGTAGCCAAAAGAGCATACCCCTTCTTTCTTTTGCCGATGCAACTCCAAAGTGGGCTTTTGAGAAGTGGAACTTCCTGCTTCAAACCTCACCAAATGAACATATGCAGATGAAAGCAGTAGCTTCTATTGTTCAATCTTGGGGATGGTTCCAAGTTAACATCATATATGAAGATAGAGATTCTTCATTAGTTGGAGTTTTGACTCATCTCGTTAGAGCTCTAACAGAAGTAGGTGCAGAAATAAGTAATCTTCTGGCCATCTCACCTTTTGATTCCTCCTCAGTAATGTCCCAAGAGCTGGAAAACCTAAGAGATGGACGCTGTAGAGCCTATGATTCTGCATGGGCTTTGGCTCTAGCAATGAGGGAAACGAACAACAGATCAGGAGGCCAAGTTTTGTTAGACAAGATTTTGCTCAGTAATTTCACTGGCTTAAGTGGGAATATTGAGTTCACAGACCATAAGTTAGCTCCTGCACATACGTTTCAGATTATCAATGTGATAGGAAAAAGCTTATATAGAGAACTTGGGTTCTGGTCAGATGAACTTAACTTTTCAGAGATCATTAGCCCAAATGCTACTTTCAGTTCATCTATGAAGGATTTGGGACAAGTATTTTGGCCAGGAGGAGCTTGGTCCATACCAGCAGGTGCTGAACCACTGAGAATTGGAGTCCCCTCTACATCGCCATTTAAACAATTTGTGAATATAATTCAGGATCAACATGAAAATACTACCTCTTTCGAGGGATTTGCAATAGATCTCTTCAAAGCAACTATAGACTTATTGCCATACCACCTGGAATATGACTTTTTTGCCTTTAACGGTTCATATGATGAATTGGTGGAGCAAATTTATCACAAGTCTATGGTGGCACCTGAAAAGTTTTTCATCAGTCATAATTTTGTCCCTGAAACACCATGGTTTGTAAGTCCTGGTAGTTTAGCCGTCACATGGGAAATGTTACATAGTAACCTATCAAGGATGGCGAAAGTGGTTTGGGTGTTTGTAGGGCTTATAATAGCACAGACTTACACAGCTAGCCTTACCAGCATGCTCACTGTTGCAAGGTTTGAGCCCATAGTGGACAGCATTGAGCAGCTTCGCAGTAGTAATGCAATAGTGGGATGTAATCATGGTTCTTACATGAAATGGTATCTTCAAAAAGTGTTTCACTTCAGTCCTGAAAACATCAAGCTAATTGACTCTTATGAGATGTATGCTAAAGCCCTCAAGAGCAAACAAATAGCAGCTACTTTCCTTGATGTCCCCAAGGCCAATATCTTCCTTGCAAAGCATTGCAAAGGGTTTATTACAGTTGGGCCTACATATAAAATGGGAGGATATGGATTTGCATTTCCAAAGGGATCTACATTGCTTCACAAAATAAATCAAGCTATGCTAAACATATCTGAGAATGGGACACTGCGAGATCTAGAGAACAACATGCTTGCATCAGAGGAGTGCAAAGATGATGACAAAATGCCAGAAGGAGAAATTTCAAGTCTTAGCGCTAGCAGCTTCTTGGTGCTCTTCATCATAACTGGAGGTACCTCAATGTTCGCTTTCTTAGTTCACTTCTTTCCCTCGAATGTCTTGAGCCATACCCAGAAAACAATGAAGACACTCATGATGGCTAGGGTTAAAAAGTGGAGTTCCCAGAAAAGGCTATTCTCTAGAAGAATCAACAATGTTGCAGAAAGTCCATTGAACTCTTCCAACACTTCTAATTTGCCTACATAG 2055 0.4097 MAMILRNAAAGDDIAENSEHFEGIIGAIVDGSSRSGKEQIVAMKMALQDFYHYSNQSFALHIMNSQGNDSLQAAFAAKVLIDEQKVEAIIGPETWEETSSVAEVCSQKSIPLLSFADATPKWAFEKWNFLLQTSPNEHMQMKAVASIVQSWGWFQVNIIYEDRDSSLVGVLTHLVRALTEVGAEISNLLAISPFDSSSVMSQELENLRDGRCRAYDSAWALALAMRETNNRSGGQVLLDKILLSNFTGLSGNIEFTDHKLAPAHTFQIINVIGKSLYRELGFWSDELNFSEIISPNATFSSSMKDLGQVFWPGGAWSIPAGAEPLRIGVPSTSPFKQFVNIIQDQHENTTSFEGFAIDLFKATIDLLPYHLEYDFFAFNGSYDELVEQIYHKSMVAPEKFFISHNFVPETPWFVSPGSLAVTWEMLHSNLSRMAKVVWVFVGLIIAQTYTASLTSMLTVARFEPIVDSIEQLRSSNAIVGCNHGSYMKWYLQKVFHFSPENIKLIDSYEMYAKALKSKQIAATFLDVPKANIFLAKHCKGFITVGPTYKMGGYGFAFPKGSTLLHKINQAMLNISENGTLRDLENNMLASEECKDDDKMPEGEISSLSASSFLVLFIITGGTSMFAFLVHFFPSNVLSHTQKTMKTLMMARVKKWSSQKRLFSRRINNVAESPLNSSNTSNLPT 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1229 684 Pfam Receptor family ligand binding region 42 193 IPR001828 -
Dere07g1229 684 Pfam Receptor family ligand binding region 214 272 IPR001828 -
Dere07g1229 684 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 209 392 IPR015683 -
Dere07g1229 684 SUPERFAMILY Periplasmic binding protein-like I 28 320 IPR028082 -
Dere07g1229 684 SUPERFAMILY Periplasmic binding protein-like II 312 585 - -
Dere07g1229 684 Gene3D - 402 503 - -
Dere07g1229 684 Gene3D - 536 595 - -
Dere07g1229 684 SMART GluR_14 326 590 IPR001320 GO:0015276|GO:0016020
Dere07g1229 684 Gene3D - 136 212 - -
Dere07g1229 684 Gene3D - 265 285 - -
Dere07g1229 684 Pfam Bacterial extracellular solute-binding proteins, family 3 454 585 IPR001638 -
Dere07g1229 684 Gene3D - 321 396 - -
Dere07g1229 684 Pfam Ligand-gated ion channel 424 621 IPR001320 GO:0015276|GO:0016020
Dere07g1229 684 CDD GluR_Plant 324 588 - -
Dere07g1229 684 Gene3D - 214 263 - -
Dere07g1229 684 Gene3D - 30 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1229 Dere-ChrDere07 15814957 15820567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1229 167 647 Ion Channels AT5G27100 26.731 1.94e-45 172