Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1228 ATGGCCATGATTTTCGGAATTATTGCTGCAGCAGGTGATAATGATAATGCTGAAAAATCTGAGCATTTTGAAGGCATAATAGGAGCCATTGTAGATGGCAGTTCTCGCAGTGGTAAAGAGCAGATAGTGGCTATGAAGATGGCACTCCAGGATTTCTACCATTACAGCAATCAAAGCTTTGCTCTGCACATAATGAACTCCCAAGGGAATGATCCCCTTCAAGCTGCTTTTGCAGCTAAAGATCTAATTGATGAACAAAAGGTGGGAGCCATTATAGGACCAGAGACATGGGAAGAGACATCTTCAGTGGCTAAGGTTTGCAACCAAAAGAGCATACCCCTTCTTTCTTTTGCAGATGCAACTCCTAAATGGGCATTTAAGAAGTGGAACTTCCTGCTTCAAATCTCACCAAGTGAACGTATGCAGATGAAAACAGTAGCTGCTATTGTTCAATCTTGGGGATGGTTCCAAGTTAACATAATATATGAAGATAGAGATTCTTCATTAGTTGGAGTTTTAACTCATCTCCCTAGAGCTCTAAGAGAAGTAGGTGTAGAAATAAGCAATCTTCTAGCCATCTCACCTTTTGATTCCTCCTCATTAATGTCCCAAGAGCTAGAGAAGATAAGAGATGGACGTTGCAGAACATTTAGATCAGAATACCCAGAAGAGTTTAATCATGAGCATGGGATTTTTGCAGCCCAGGCCTATGATTCTGCATGGGCTTTGGCTCTAGCAATGAGGGAAACAAACAATAGATCAGGAGGCCAAGTTTTGTTAGACAAGATTTTACTCAGTAATTTCACGAGCTTAAGTGGGAAAATTGAGTTCACAGGCCATAAGTTAGCTCCTGCACATACATTTCAGATCATCAATGTGATAGGAAAAAGCTTATATAGAGAACTTGGGTTCTGGTCAGATGGACTAAACTTCTCAGATATCATTGGCCCAAATGGTACTTTTAGTTCATCTATGAAAGATTTGGGACAAGTATTTTGGCCAGGAGGAGCTTGGTCCATACCAGCAGGTGCTAAACCACTGAGAATTGGAGTCCCCCTCAAGTCGACATTTAAACAGTATGTGAATGTAATTCAGGATCAATATGAAAATACTACCTCTTTCGAGGGATTTGCAATAGATCTCTACAAAGCAACTATGGACTTATTGCCATACCACCTGGAATATGACTTTTTTGCCTTCAACGGTTCATATGATGAATTGGTGGAGCAAATTTATTACAAGAAGTACGATGTAATTGTTGGGAATGTAGCAATAGTGTCCACGAGGTATAAGTATGCAGCATTCACTCAGCCTTATACTAGACCAGGAGCGACTATGGTAGTTCCTGTTCAATCAAAAGCAGGAAACAAAGTGTGGTTACTTGTGAAGCCGTTCACAAAGCACTTGTGGATTTTAATACTGGTCATGATTATCTACAATGGCTTCGTTGTATGGATCATAGAAAGAAACCATCACCATGAACTTAATAAACCTACGCCGAATCAAGCAAGGACCATGTTGTGGTTAGCTTTGACAACTATCTTCTCCTTACATGGGGAAATGTTACATAGTAACCTATCAAGGATGGCGAAAGTGGTTTGGGTGTTTGTAGGGCTTATAATAGCACAGACTTACACAGCTAGCCTTACCAGCATGCTCACTATTGCAAGGTTTGAGCCCACAGTGGGCAGCATTGAGCAGCTTCGCAATAGCAATGCAATGGTATTTCCAAGGGGATCTAAATTGCTTCACAAAGTAAACCAAGCTCTGCTGAACGTATCTGAAAATGGGACACTACAAGATCTAGAGAACAACATGCTTGCATCAGAGGAGTGCAAAGACGACGACGTAGAGCCAGAAGGAGAAATTTCAAGTCTTGACGCTAGTAGCTTCATGGTGCTCTTCATCATAACTGGAGGCACCTCAATGTTGGCTTTCTTGGTTCACTTTTTTCCCTCGAATTTCTTAAGCCATGCCCATAAAAAAGTTAAGACACTCATGATGGCTAGGGTTAAAAAGTGGAGATTCCATGAAAGGCTATTCTCTAGAAGAATCAACAATGTTACAGAAAGTCCATTGAACTCTCCAAACACTTCTGACTTGCCTACATAG 2112 0.4096 MAMIFGIIAAAGDNDNAEKSEHFEGIIGAIVDGSSRSGKEQIVAMKMALQDFYHYSNQSFALHIMNSQGNDPLQAAFAAKDLIDEQKVGAIIGPETWEETSSVAKVCNQKSIPLLSFADATPKWAFKKWNFLLQISPSERMQMKTVAAIVQSWGWFQVNIIYEDRDSSLVGVLTHLPRALREVGVEISNLLAISPFDSSSLMSQELEKIRDGRCRTFRSEYPEEFNHEHGIFAAQAYDSAWALALAMRETNNRSGGQVLLDKILLSNFTSLSGKIEFTGHKLAPAHTFQIINVIGKSLYRELGFWSDGLNFSDIIGPNGTFSSSMKDLGQVFWPGGAWSIPAGAKPLRIGVPLKSTFKQYVNVIQDQYENTTSFEGFAIDLYKATMDLLPYHLEYDFFAFNGSYDELVEQIYYKKYDVIVGNVAIVSTRYKYAAFTQPYTRPGATMVVPVQSKAGNKVWLLVKPFTKHLWILILVMIIYNGFVVWIIERNHHHELNKPTPNQARTMLWLALTTIFSLHGEMLHSNLSRMAKVVWVFVGLIIAQTYTASLTSMLTIARFEPTVGSIEQLRNSNAMVFPRGSKLLHKVNQALLNVSENGTLQDLENNMLASEECKDDDVEPEGEISSLDASSFMVLFIITGGTSMLAFLVHFFPSNFLSHAHKKVKTLMMARVKKWRFHERLFSRRINNVTESPLNSPNTSDLPT 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1228 703 Pfam Bacterial extracellular solute-binding proteins, family 3 369 604 IPR001638 -
Dere07g1228 703 FunFam Glutamate receptor 342 457 - -
Dere07g1228 703 SMART GluR_14 346 609 IPR001320 GO:0015276|GO:0016020
Dere07g1228 703 SUPERFAMILY Periplasmic binding protein-like I 30 342 IPR028082 -
Dere07g1228 703 Gene3D - 25 187 - -
Dere07g1228 703 SUPERFAMILY Periplasmic binding protein-like II 334 604 - -
Dere07g1228 703 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 562 658 IPR015683 -
Dere07g1228 703 Pfam Ligand-gated ion channel 605 640 IPR001320 GO:0015276|GO:0016020
Dere07g1228 703 Gene3D - 458 595 - -
Dere07g1228 703 Pfam Receptor family ligand binding region 44 204 IPR001828 -
Dere07g1228 703 Gene3D - 343 457 - -
Dere07g1228 703 FunFam Glutamate receptor 458 593 - -
Dere07g1228 703 Gene3D - 188 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1228 Dere-ChrDere07 15794736 15801273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1228 27 580 Ion Channels AT2G29120 28.808 4.22e-75 259