Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1224 ATGGATCAGATGACTGATTTAGATATGGATCGACGAAGGCATGGGAATTTTAATTCTGAACCCTGTATCCTTTTTAGAAGTGCGAGCATTTTGCAGCCAAATATCCGCACAGTGGCATCAGCTTCAGGGAATACAACTAATCCTGATTCTCACTATCTATCAGATGCCTATGAAAATGCTGTAATGTATGGAATGACACAATACAATGGCATTCAACCTCAACGGAATTTAGATATGGTTGTTCCAGCTGCAACCAACTTGCATTATCCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTACCTCTCCCTATCAATCACAGAGCCTATGATCAGTTGCCAGCTTCAAGCACATTTGCTGTCTCTGGAGTTTCTTCAGATAATTTTGGATGGAGCAGCAGCTTCGTGGATGATGTCAGAGGTCCATTTAAAAGAAAAAATGCTGAAACCATTAGAGGAAATTTCCAGCGCTTCGATGCAGCTAGTTCTTCAATTGCTCCCCCAAATGCAAGGCACATTGATGGTGTTGCTATTATAGATGCTGCTTCCTTACCCCTGACTCAGTTTCAAGGAAATGGCATCCCTTCGCTCATGGAACTAGGACCTCATGGTAGTTTGTGGAGCAGGTCAGGTGAGTCAGTTATGGTGCACGAACATAACCATTTGATTCGAGGAAACTATTTAGGGCAGCACTTTCAGCCGGTTGCTCCTCCCTGGTTGGACCAACAGTCAAATAGTAGTAACAGTGATGGACATACCACAGCTTGGAATCAATCTCTTCCAATGCCTTATATGCGAGCACCAAATGTTAATGGAAGTTCAACAGAGAATGCAAATATGGGTTTGCAGAGATATCTTGATACAACTAGCAGCATAAATGGCCTCAGATTCTCTCATTCTCCTGTCAACCATCAGCACCATAGTTATCATCATCCAGCATTACCTATGCAAGGAGTTAGAGGCCACAATATCAACTTTCAACCTCCAGTAAGCGCATCTTATAGAATTCCAACAAATCCTTCACGCAATGGTGTGATCCATGTACAGAATGGTTTCGAGATGGGTCCTAGGCATGTTGGCCTTATACCATCAACAGGCCCACGGATATATCGTCCTCATAGAGGAAACATGGCTGAGACAACACATCGAAATCATCACCCTACGGGCTTTCTCCAAGTTGATGATGTTGCTTTACTTGATGAAGTGGGTTTGGTTGACCATCACAGAGATATGCGCTTGGATATAGAGGATATGTCTTACGAGGAGCTTCTTGCATTGGGCGAGCGGATTGGCAATGTAAGCACTGGTCTATCAGAGGAATCTATTTCAACTCTGTTGAAGACTAAAATTTACGTAACATCCAGTGCTATGAACATGGAGGAGGAAGCTTCTGAGGACCAGGAAACTGATTCTTGCATAATATGCCAGGATAAATATAAGAACCGAGAGAAGATAGGAATTCTTCAATGTGGCCATGAGTATCATGCAGATTGCTTGAAGAAATGGCTGCATGTGAAAAATGTTTGTCCGATATGCAAATCGGAAGCATTAACTCCTGGGAAGGACAAAGGAGTATAG 1578 0.4284 MDQMTDLDMDRRRHGNFNSEPCILFRSASILQPNIRTVASASGNTTNPDSHYLSDAYENAVMYGMTQYNGIQPQRNLDMVVPAATNLHYPGMNPSSSTGVLPLPINHRAYDQLPASSTFAVSGVSSDNFGWSSSFVDDVRGPFKRKNAETIRGNFQRFDAASSSIAPPNARHIDGVAIIDAASLPLTQFQGNGIPSLMELGPHGSLWSRSGESVMVHEHNHLIRGNYLGQHFQPVAPPWLDQQSNSSNSDGHTTAWNQSLPMPYMRAPNVNGSSTENANMGLQRYLDTTSSINGLRFSHSPVNHQHHSYHHPALPMQGVRGHNINFQPPVSASYRIPTNPSRNGVIHVQNGFEMGPRHVGLIPSTGPRIYRPHRGNMAETTHRNHHPTGFLQVDDVALLDEVGLVDHHRDMRLDIEDMSYEELLALGERIGNVSTGLSEESISTLLKTKIYVTSSAMNMEEEASEDQETDSCIICQDKYKNREKIGILQCGHEYHADCLKKWLHVKNVCPICKSEALTPGKDKGV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1224 525 FunFam E3 ubiquitin ligase BIG BROTHER 433 517 - -
Dere07g1224 525 Pfam Ring finger domain 470 513 IPR001841 -
Dere07g1224 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 517 IPR013083 -
Dere07g1224 525 SUPERFAMILY RING/U-box 471 517 - -
Dere07g1224 525 CDD RING-H2_RNF24-like 470 516 - -
Dere07g1224 525 SMART ring_2 472 512 IPR001841 -
Dere07g1224 525 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 139 517 IPR045191 GO:0061630
Dere07g1224 525 ProSiteProfiles Zinc finger RING-type profile. 472 513 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1224 Dere-ChrDere07 15742338 15744587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1224 391 517 C3H Transcription Factor Family AT2G15530 49.624 4.70e-37 144