Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1213 ATGGGTCGGGTGACGCCGACCCGGTTCGCATTACGAAGGTGGCAGGAGAGGGATAGCACAGAACACAGAAACCGTGAGTTCCAAGCCAAAAGGGTTGCAATTGCAAGCAAATCAGAGAAGAAGGGCTTAACCAACCCAAATGGGAGAAGATCGTGGGGGAATTTTTTGCTTATCTGGGGAATCACCCCCTCAAAGATCAAAGATTCTGTCTTTCTCTGCTCTACCTTGTACGTGTGCTCTTCAATGGAAAACTACTACAACCTTGACAACAGTGATGCCCATTTGCCTCCTGGTTTTCGTTTCCACCCCACGGACGAGGAGCTGATCACGTACTACCTCCTCAAGAAGGTCCTTGACAATAGCTTCACTGGCAGAGCCATTGCTGAAGTTGACCTCAACAAGTGTGAGCCGTGGGAGTTGCCTGAGAAAGCCAAGATGGGGGAGAAGGAGTGGTACTTTTTCAGCTTGCGTGATAGAAAGTACCCGACTGGGCTACGAACAAATAGGGCAACAGAGGCAGGATACTGGAAGGCCACTGGGAAAGACAGAGAAATCTATAGCTCAAAAACTTGCTGTCTGGTGGGTATGAAGAAGACCCTTGTTTTCTACAGAGGCAGAGCTCCTAAAGGCGAGAAGAGCAACTGGGTAATGCATGAGTATCGCCTTGAAGGCAAATTTGGTTACCATTACCTCCCTCGCACCTCCAAGGACGAGTGGGTCATTTCCCGTGTGTTCCAGAAGAATAGCTCCGGCAACGGCGGCTCTGCCACCATATCCTCCTCCTGCAGTGGCTCAAAGAAGACCCGAAACATCATGAGCTCTTCTTCTAACTTGAGTCTGTACCCAGCAGAGCCTAGTTCTCCCTCCTCAGTCTACCTTCCGCCTCTGCTCGATTCCTCTCCCTTTTCCACAGCCGCCGCAAGCAGCACCGCTGCCTCCGCCGCTGTCAACGACCGTGACAGTTGCTCTAATACTTATGACAGCATTACTACCCCAAGACAGCACGTGTCCTGTTTCTCCACAATCTCCGCCATCGCCAACAACAACTACAACTTCGACTTGGTCGCCGCTTCCCCATCTGTTACGGTGGACCCCTTTGCTCGGTTCCAGAGAAACGGCGTCGTGTCCCCCTTCTCGAGCCTGAGGTCGTTGCAATTGCAAGACAACCTTCAGCTTCCCTTCTTTTTCTCGCCGCCGCAGCCCTTTCAAGGCGTTCCTGTCGACATGAACTGGGTGGCGCCGACGGAAGAGCAGAGGGTGGTGGATGGTGATTCCAGCATGGCGGGTTTGGGTGGCTCTGAGCTCGACTGCATGTGGGGTTTCTGA 1326 0.5256 MGRVTPTRFALRRWQERDSTEHRNREFQAKRVAIASKSEKKGLTNPNGRRSWGNFLLIWGITPSKIKDSVFLCSTLYVCSSMENYYNLDNSDAHLPPGFRFHPTDEELITYYLLKKVLDNSFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCCLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFGYHYLPRTSKDEWVISRVFQKNSSGNGGSATISSSCSGSKKTRNIMSSSSNLSLYPAEPSSPSSVYLPPLLDSSPFSTAAASSTAASAAVNDRDSCSNTYDSITTPRQHVSCFSTISAIANNNYNFDLVAASPSVTVDPFARFQRNGVVSPFSSLRSLQLQDNLQLPFFFSPPQPFQGVPVDMNWVAPTEEQRVVDGDSSMAGLGGSELDCMWGF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1213 441 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 94 309 - -
Dere07g1213 441 Pfam No apical meristem (NAM) protein 96 222 IPR003441 GO:0003677|GO:0006355
Dere07g1213 441 SUPERFAMILY NAC domain 86 247 IPR036093 GO:0003677|GO:0006355
Dere07g1213 441 Gene3D NAC domain 104 251 IPR036093 GO:0003677|GO:0006355
Dere07g1213 441 MobiDBLite consensus disorder prediction 248 270 - -
Dere07g1213 441 ProSiteProfiles NAC domain profile. 95 247 IPR003441 GO:0003677|GO:0006355
Dere07g1213 441 FunFam NAC domain-containing protein 100-like 104 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1213 Dere-ChrDere07 15539731 15544295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1213 85 441 NAC Transcription Factor Family AT5G53950 53.093 8.91e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere07g1213 NAM 8.9e-41 No_clan