Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1173 ATGGACCCTGACGTTGTGGAAATTCCTCCTCCACTCCATCGCCCTTCGAAATTAATCAAACAGAAGGATATTCTGTGTGATGTGATTGACATTGACAATGATGAAGATTCTGCTGATTTAGTGTTTATTGGTGAAAAAGTTGGTGGAAGCAACAAGGGGAAGACAATTGAAGCTGTTCAAAATGGCTATGGTGATCATCAAGCTATGGAAATGCCTGACAATAACTATTGCCCACCTGGTACGGAACAATTTGGACCAGCTAGTGGGGTCGAGTCCTCCAATGGTTATGCTCCAGCATCACATAATATAATTAATGTTGATGGTCACAGTTCTGATCTATCAAACGATGATGATGACTACAATGATCCTTTTTTAGAAGAATTCATGGATGTTGATGAGTATGCCGTATTACAGGCACACTTTGATCAGGTGGATATACCTGCTGGAATTGAGGCACCCATTCCTTGGATGCCTAATTTTGATTTAGGTTCAGAGAAATCTGTAAATAGTCCATTGTATCCTTGGTGTCCTACGCACTCAGATGCCAAAAATCAGATTTCTTGGGCAACAGAGCCTACTCATCCCATGGAAGGAACTTCAGTATGTAGTTCTAGTTTGCTAGTAAAAAAAGATACTATTAATCAACCTTCTGGAACGGAGTTGTCTTCTCAGTTATTTACTCAAACTGCCCCTGGTAAAATGGAATCAAATGCATCACAACATGGTGGGGGAAAACTGAACTTGAATCTGTCACTAGGGGTAGATTCGTCCAAACCTCAATGGTATAAGGGATCTTTCCATAATAAGAAGAAGGTTTTGACTGAATTTTCTAGCAGTGTTTTACTAGACAAGTCAGAGTCCATGAAGCTGCCACCTGGAAGTGAATCACTATTTTGGGAGCAATTTAAGAGTGCAAAAAAGGCACACGGCAAGGATGTTTTGTTCCATAAAACTTTCGTTAATCCTCCTCAAGGGGCTTACCCCTTTCCTGAAATAGAATCAGGAAATGTCATGTGGAAGAATCCTCCTAATTATAACCCATCTTTTATTAATCCTTCAACTCATTCAGGTTTTTTTTATCCATTTGATCCCCTTCATGTCCCTCCTGAGCCAATGTTTGGTAACACTTGGGTTCACAATTATGCCAGAGATGGAATGAATGAATCCACTGCTGACATCCCTGTTGTAACAATCTCTGATGAAGATAGAGATGAAATCTTGAGGAAATTCCAACATTTTAAACAGTTTGACACTGTTGAAGACACTTCAGACCATTACTATGTTGGCAGAAATTATTCGATGAAGCAGCATTCAAAGAATTGGTCCAAAAGAATTCAGGAAGAGTGGAAGATTCTGGAGAAGGATTTGCCAGACTCAATATTTGTTAGAGTTTATGAATCAAGGATGGATCTTTTGAGGGCTGTAATTATTGGAGCAGAGGGAACTCCTTATCATGATGGTCTCTTCTTTTTTGATCTTTTCTTTCCCAGCGGCTATCCCAATGTGCCACCGGAAGTCCACTACCACTCTGGTGGCATTCGGCTTAACCCAAATTTGTATAATTGTGGTAAAGTATGCCTTAGTCTACTTAATACTTGGTCTGGAAATAAGAATGAAAAGTGGCTTCCTGGTGTTTCAACAGTTCTACAGGTTCTAGTTTCTATACAAGGTCTAATCTTGAATACAAAGCCTTATTTTAATGAACCTGGATATGCTCATACGAGTGGTTCAGCAGCTGGCGAAATGAAGTCCCTACAGTATAATGAGGATGTATTTATCCTATCATTGAAGACTATGACTTACGTGATGAGGAGGCCTCCAAAGTATTTTGAGGACTTCGTTGCGGGGCATTTCTGCAGCCGAGCACATGATATCTTGGTGGCATGTAAAGCATACATGGATGGTGCTCAAGTTGGCTGTTTGGTAAAAGGTGGAGTGCAGGATGTTGACGTGGGCGACAGGAGCTGCTCAAAGCAGTTTAAAGATGCTTTAGCTGGATTTTTAAATAAGCTTGTTAGACAGTTTACCCAAGTTGGAGCCAAGGACTGTGGGAAATTCTTGCCTCCAGCAACAACCGGGAACAAACCGTCAGGTGGTTCGCCTGAGGCTGCTTCTGCTACCTGA 2124 0.4105 MDPDVVEIPPPLHRPSKLIKQKDILCDVIDIDNDEDSADLVFIGEKVGGSNKGKTIEAVQNGYGDHQAMEMPDNNYCPPGTEQFGPASGVESSNGYAPASHNIINVDGHSSDLSNDDDDYNDPFLEEFMDVDEYAVLQAHFDQVDIPAGIEAPIPWMPNFDLGSEKSVNSPLYPWCPTHSDAKNQISWATEPTHPMEGTSVCSSSLLVKKDTINQPSGTELSSQLFTQTAPGKMESNASQHGGGKLNLNLSLGVDSSKPQWYKGSFHNKKKVLTEFSSSVLLDKSESMKLPPGSESLFWEQFKSAKKAHGKDVLFHKTFVNPPQGAYPFPEIESGNVMWKNPPNYNPSFINPSTHSGFFYPFDPLHVPPEPMFGNTWVHNYARDGMNESTADIPVVTISDEDRDEILRKFQHFKQFDTVEDTSDHYYVGRNYSMKQHSKNWSKRIQEEWKILEKDLPDSIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDLFFPSGYPNVPPEVHYHSGGIRLNPNLYNCGKVCLSLLNTWSGNKNEKWLPGVSTVLQVLVSIQGLILNTKPYFNEPGYAHTSGSAAGEMKSLQYNEDVFILSLKTMTYVMRRPPKYFEDFVAGHFCSRAHDILVACKAYMDGAQVGCLVKGGVQDVDVGDRSCSKQFKDALAGFLNKLVRQFTQVGAKDCGKFLPPATTGNKPSGGSPEAASAT 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1173 707 MobiDBLite consensus disorder prediction 87 118 - -
Dere07g1173 707 SMART ubc_7 443 600 - -
Dere07g1173 707 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 403 682 - -
Dere07g1173 707 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 440 600 IPR000608 -
Dere07g1173 707 Gene3D Ubiquitin Conjugating Enzyme 399 678 IPR016135 -
Dere07g1173 707 SUPERFAMILY UBC-like 430 608 IPR016135 -
Dere07g1173 707 CDD UBCc 442 569 IPR000608 -
Dere07g1173 707 Pfam Ubiquitin-conjugating enzyme 444 565 IPR000608 -
Dere07g1173 707 FunFam Probable ubiquitin-conjugating enzyme E2 23 403 679 - -
Dere07g1173 707 MobiDBLite consensus disorder prediction 87 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1173 Dere-ChrDere07 15127034 15146103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1173 397 691 Miscellaneous Gene Families AT2G33770 47.811 5.51e-85 285