Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1166 ATGGAACCGGCATGCTTAGACTGTAATGGAGGCATCTCGTGTAAGAAAAATTCGAAATCTATTTCTACACAGACAACTGTCTCTGAAAGTGACAATGGTTGCTTCGATTGCAATATATGCTTGGAGTCAGCTCATGACCCTGTGGTCACTCTGTGTGGTCACCTGTACTGCTGGCCATGCATATTCAGGTGGCTTCAAGTTCAGAGCTCTTCTGATGAATCAGACCAGCAGCAACCTACGTGCCCAGTTTGTAAGGCTGACCTCTCTCATACTTCATTAGTCCCCCTTTATGGCCGTGGAACATCTAGAACAGATTCTGAAGTCAAGAAACTCCAGATGGATCAGGGAATACCTCGTCGACCACCTCCTCACAGCTTGAATGCTATGTTAGATTCTACAAGTGCTTCTACTTCTCATCCTGGTCATCTCCATCCAAATTATTTCCAGTCACAATCACAGCCATTTCATTACCCTCAATACTTCCCTCACCTTTACCGAGGTTATGCTTCTAATGGATCACCATTTTTTGGGGGTGCAGCCCTGACTAGTTTCTCCAATCCAATTATTGGTATGTTCAGGGAGATGGTCTTTGCAAGGATCTTTGGGAGCTCTGATGCTAATTTGTCGGCATATCCTTATGTCAGTTATTACCCTCACAATGGAAGTGGCAGTCATAGAATGAGAAGGCAGGAAATTCAGATTGACAAGTCTCTAAGCAGAGTATCTATCTTTTTTCTCTGTTGTATCATTCTGTGTCTTCTCTTGTTCTGA 771 0.4371 MEPACLDCNGGISCKKNSKSISTQTTVSESDNGCFDCNICLESAHDPVVTLCGHLYCWPCIFRWLQVQSSSDESDQQQPTCPVCKADLSHTSLVPLYGRGTSRTDSEVKKLQMDQGIPRRPPPHSLNAMLDSTSASTSHPGHLHPNYFQSQSQPFHYPQYFPHLYRGYASNGSPFFGGAALTSFSNPIIGMFREMVFARIFGSSDANLSAYPYVSYYPHNGSGSHRMRRQEIQIDKSLSRVSIFFLCCIILCLLLF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1166 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 253 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dere07g1166 256 Pfam RING-type zinc-finger 37 82 IPR027370 -
Dere07g1166 256 ProSiteProfiles Zinc finger RING-type profile. 37 85 IPR001841 -
Dere07g1166 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 146 IPR013083 -
Dere07g1166 256 SMART ring_2 37 84 IPR001841 -
Dere07g1166 256 SUPERFAMILY RING/U-box 33 97 - -
Dere07g1166 256 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1166 Dere-ChrDere07 15049038 15049808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1166 9 242 C3H Transcription Factor Family AT4G27470 44.726 1.74e-56 179