LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g1116	ATGGAATACCCTTTTCCTCAGAAGGGAAAAGACAGTGGATGTTGGACATCCCACGGAGTCCTGTTGGAGGGACCAACATCATTTGATGGTGGCACAAGAAGTTCAATTTCAGAGGAGATGCTTAACAACTTCAACGAGTTCATGAATTTTGATACTTATGCTGGTTGGTGCGATAGCTCATCAACCACAGATCAGATTGTAGCCAATGGCCTTTCATCATATGCCCCGGTACCATATGCATCACCTGATGGATTCAATTTAGTGGAACAGAGCAGTGGTTCATGCTTTATGAGTGATTATAATAAAAATTACAATGCAACAAGATGTTTCCCCAGTTCTGGGGAGAAAGTTGCATTTCAGCAAATGGACACCCAACTTGGGTTCCCTGATGATGGAAATGATGCCAGTAACTTAAACTCTAAACAGCATATTAATGAACCTTTTCAAGAACTTGATAATTTAGAGATGAACAATTATATAGTTTCTAGGCCACCTGGCTGGTCACTAGATCAGAGAATGCTGAGTGCTTTGTCCCTTTTCAAGGAATCAGCTGGTGGGGGAATCTTGGCACAAGTTTGGGTACCCATGAAGCATGGAGATCAATTTATCTTAACCACAAGTGAGCAACCATATTTGCTAGACCAAATGCTTGCGGGATATCGTGAAGTGTCAAGGACATATACATTCTCAGCAGAACGAAGACCAGGTTCCTTCTTAGGACTTCCTGGTCGTGTCTTTATCTCTAAAGTTCCTGAGTGGACTTCCAGTGTTGGTTACTATAACAAGACTGAGTATTTGAGGGTTGAGCATGCAATTAAGCATCATGTTCGTGGATCAATTGCTATTCCAGTACTTGATCTTCACTCTGAAATGCCATGTTGTGCTGTACTTGAACTTGTCACTACAAAGGAAAAGACTGATTTTAATAGAGAATTGGAAATTGTTTGCCAAGCGCTTCAGGCTGTGAATTTAAGGACAACTATGCCTCTCCAACTTCTTCCCCAGAGTCTCTCAAATAAGAAAAGAGCTGCTTTAATAGAGATAATGGATGTGTTACGAGCTGTGTGTCATGCACATAGTTTGCCTCTGGCATTGACATGGATTCCCTGTTGTTACACCAAGGGAATTGGCGATGAGTCTACGAGAATTAAAATTAAGGAGGGTCATTCAAGTTCTAGTGAGAAATGTTTCTTATGCATTGAAGAATCAGCTTGCTATGTAAATGATAGCGCGATGGAAGGATTTGTTCATGCATGTGTTGAACATTATCTTGAGGAAGGGCAAGGTATAGCTGGAAAAGCTATTCAGTCAAATCATCCATTTTTCTATCCTGATGTGAAGGCATATGATATTGGTGAATATCCACTTGTTCAACATGCACGCAAATATAATTTGAATGCTGTGGTTGCAATCAGGCTAAGGAGTACCTTCACCAATGATGATGATTACATTTTAGAATTTTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAACAGCAACTTTTATTGGACAATCTCTCAGGTACCATGCAGAGAATTTGTCGAAGTTTGAGGACAGTTACTGATGCTGAATTATCAGGAGTATCTGGGTCACAAGTAGATTTTCAAAATGAAAAAGTATGCGGTTTTTTGCCCATGTCTAGGAGAAACTCTCAAATAGAATTAACGGATGGCGACCACAACTCAGTCAGGGAGGTTCCCTTAAAGGCAGCCAACCTGAGAAACAATGGAATTGAAGCTGCTTATAACCAGTCAATGAGTGGATCGAGAAAGCCAGTGGAGAAAAAGAGAAGCACAGCTGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTTTAAAGGATGCAGCAAAGAGCATTGGTGTTTGTCCTACAACTCTGAAAAGGATATGCAGGCAGCATGGCATTTCAAGATGGCCATCCCGTAAAATAAATAAAGTAAATCGGTCATTAAAGAAAATTCAGACTGTGCTTGATTCTGTTCAGGGAGTGGAAGGAGGGTTGAAGTTTGACCCATCTACTGGGGAGGTTGTGGCAGGTGGTTCAATCATTCAAGAATTTGATGCACATGGTAGTCTTTTGTTCCCTGAGAAGAGTATGCCAGTACAAGATCCTGAGTGTGTTGTGCAAGGTGCGGTCTCAGTACGTCCAGTGCCTTGTAATGGAGATAATTCAGCAATTAAGTTGGAGTATAAGGATGTTTATTTGGCTGATAACCAGCTTGTGAACTCAAGGGGTGTACTTGCCCCTAATTCTTGCGAGAGAGAATTGAAGAAAACCAAAACTACTTCTGTTCATTGTAGTGAAGATTTGAAATCAATGGTCTTGGATGATGGATCATGCCAAACAGCGAAGGCTCAGGATTGTCCTGAGCAAGCACGTCTGGGTTCAGTTGTTGCAAAAGGACATAAATGGTGTCTGAACAAGGATGGTCAGGGAGTGAAAAATTCTGGCCGTGATATTGTCTCTTGGTTTTCAGGCTCCTTGATTGCTGATGAGATGGAGAATGTTGTGGATGGGGACAATGGGGTTGTTGAGCATAACCAACCTACTTCTTCTAGCATGACAGACTCATCCAGTGGCTCTGGTTCAATGATCCATGGAAGTTCGTCTGGCTCTCAGAGCTTTGAGAATCAGAAGCATTCCAAAGTCAATTCAACCCTCGATGACAGTGGATCGAAAATTATTGTGAAAGCCACCTATAAGGATGATAGCATACGTTTCAAGTTTGATCCATCTGCAGGTTGTTTCCAGCTATACGAAGAAGTAGCAACAAGATTTAAATTACAAAATGGGTCATTCCAGCTTAAATATTTAGATGATGAAGAGGAATGGGTGATGTTGGTAAATGATTCAGATTTGCAAGAGTGCCTAGAAATATTGGATGATATTGGCACCCGTAGAGTGAAGTTTCTAGTTCGTGATATGCCTTGCTTCTTAAGCAGCTCTGGTAGTAGCAGTTGCTACTTAGGAGACTCCTAG	2994	0.4135	MEYPFPQKGKDSGCWTSHGVLLEGPTSFDGGTRSSISEEMLNNFNEFMNFDTYAGWCDSSSTTDQIVANGLSSYAPVPYASPDGFNLVEQSSGSCFMSDYNKNYNATRCFPSSGEKVAFQQMDTQLGFPDDGNDASNLNSKQHINEPFQELDNLEMNNYIVSRPPGWSLDQRMLSALSLFKESAGGGILAQVWVPMKHGDQFILTTSEQPYLLDQMLAGYREVSRTYTFSAERRPGSFLGLPGRVFISKVPEWTSSVGYYNKTEYLRVEHAIKHHVRGSIAIPVLDLHSEMPCCAVLELVTTKEKTDFNRELEIVCQALQAVNLRTTMPLQLLPQSLSNKKRAALIEIMDVLRAVCHAHSLPLALTWIPCCYTKGIGDESTRIKIKEGHSSSSEKCFLCIEESACYVNDSAMEGFVHACVEHYLEEGQGIAGKAIQSNHPFFYPDVKAYDIGEYPLVQHARKYNLNAVVAIRLRSTFTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVTDAELSGVSGSQVDFQNEKVCGFLPMSRRNSQIELTDGDHNSVREVPLKAANLRNNGIEAAYNQSMSGSRKPVEKKRSTAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSTGEVVAGGSIIQEFDAHGSLLFPEKSMPVQDPECVVQGAVSVRPVPCNGDNSAIKLEYKDVYLADNQLVNSRGVLAPNSCERELKKTKTTSVHCSEDLKSMVLDDGSCQTAKAQDCPEQARLGSVVAKGHKWCLNKDGQGVKNSGRDIVSWFSGSLIADEMENVVDGDNGVVEHNQPTSSSMTDSSSGSGSMIHGSSSGSQSFENQKHSKVNSTLDDSGSKIIVKATYKDDSIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECLEILDDIGTRRVKFLVRDMPCFLSSSGSSSCYLGDS	997

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g1116	997	MobiDBLite	consensus disorder prediction	849	892	-	-
	Dere07g1116	997	ProSiteProfiles	PB1 domain profile.	898	980	IPR000270	GO:0005515
	Dere07g1116	997	SMART	PB1_new	898	980	IPR000270	GO:0005515
	Dere07g1116	997	MobiDBLite	consensus disorder prediction	845	892	-	-
	Dere07g1116	997	ProSiteProfiles	RWP-RK domain profile.	583	671	IPR003035	-
	Dere07g1116	997	Pfam	PB1 domain	901	979	IPR000270	GO:0005515
	Dere07g1116	997	Pfam	RWP-RK domain	603	651	IPR003035	-
	Dere07g1116	997	PANTHER	PROTEIN NLP8	108	991	IPR045012	GO:0003700
	Dere07g1116	997	Gene3D	-	894	978	-	-
	Dere07g1116	997	SUPERFAMILY	CAD & PB1 domains	891	981	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g1116	Dere-ChrDere07	14548324	14553230	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g1116	1	995	NLP Transcription Factor Family	AT2G43500	48.461	0.0	835

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Dere07g1116		PB1	4e-17	CL0072