Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1107 ATGCTGCTTCCGAAATCAAGCAATCCTGTCCAGGAAAGGGATGGCTCTTCTGAAGAGACAGAGGTCCTATCGAACGATCTATGGATTGGGGATTTGTCATCTGACGTGTCGCAATCCGATCTGATGGCCCTCTTCGCCCCATTCGGCCCTCTCTACAGCGTCATCCGGTCTTCGGCGCGGAGGTACGGTTTTGTGTTTTTCAAGAACATGGAAGATGCAAAGGCAGCTAAGAATGCTTTACAAGGCACCCTTCTTCAGGGGAATCCCGTAAAGATTAAGTTTGCCAGACCGGTCGGTTCTTCTTTTTGTGCTTTCTTAGCTTTGGATACTTCTTACAAGATTCCTTTGTTAGGGTACCGTGATATTTATTCTTGTGATGTGTGTTTGGATTCCTGTGTCCTGTGTCCAGGCAAAGCCATGCAAAAATCTGTGGGCGATGAAAATCATGAATGGGAAGTGTATAGGTGGGGACCATATTTGTGTAGATTACTTTCGATCAGAGTCCTCAAGAAAAGTAAGTTTGTGTTGAGGATGGATCTGCTGCTTGATTATGGGAAGTTTCAAGGAAAAAGCTTGGGGCCAACTGATCTTTATACTGGTCAGAAAAGACCTAAGTGTATACAATCTTCAGTTAATAAGGAGGATGGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTTCTTCGGTTCAGATTGATGAGCAAATGCTCCATAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATAACATGTTATCCTTCGAGAAATTATTCCTTTGTGGAATTTAAGAGCATGGATGAAGCTCGATGTGCTAAGGAAGGTCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACGATAATGTATTCAAGTAGCAAGCTGAAACCTGGAAAAGATTTTTCTGACCTTTACCCTAGAAGTAAAGGGCTAAGGCCTGACATTTTCTTGAGCACGCATCAGTTTCAACCGCTGCAGATGGATGTATTTGGTCATAGTCATCCAATGGTACGAAATAATTTTCCTGGCCAGTTACCACTTGGTGGTGTTATTGGGTCTAATGCACCAATGAGACCTTATGGTCCTCAAGGTAGTAATATACCTCTGATTTCAGGCCCTGAGTTAGATGATCCGGGTGCTTGCTACAAATATCAGGATGGTAGCACCAGAAGTCAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCATCAGGGATGCTTCCTTATCTGTCAGCTACTAGGCCTGCTACAAGATCCTCATCTATTGCATGGGATGTATTTGACATAAAACAGTGTCAGGGAGATTCTAAACGATCAAGGATGGATGGTGCTTTACTTGTTGATAATGCTACATTTCCTTTAAGGAATTTTGATGACTGTGGTTTAGGACCAAAACAATCATATGGGATTGATCCAGTTATTAGTGGAGGTGTTTCTGGTCCATATGTGAACATTCATGGAAACATCCACCTTGGTTCAGAGGGCTCAAGGATCACTGCTGGAGTACCTAGTCTAGTTCATCCAGATATTGATCATATATGGCGTGGAGTTATTGCGAAAGGGGGAACCCCTGTTTGTTATGCTAGATGCATCCCTGTCGGAAAAGGGATAGGGATTGAATTGCCCAAGGTGACTCGGGTCTACTCCAGAAGACATAAATTACCAAACGAGGGGGAGGGTGCTGAGGGAAATATCCCTAAGGGTGAGCTGGCACAGGGGGAAGGCTTGGATTATTAACCTGAAGTTGTTGATTGCTCGGCTAGGGCAGGATTGGATATGCTCACAAAACATTATGCTGATGCTATTGGTTTTGAAATTGTTTTCTTTTTGCCTGACAGTGAAGATGATTTTGCTTCATACACTGAATTCCTATGCTACCTGAGCACAAAATACCGTGCTGGTATTGCCAAATTGATCGATGGGACCACCTTATTCTTGATACCTCCTTCTGATTTTCTAACCAAAGTTTTGAAAGTCACAGGACCTGAACGTTTGTATGGTGTGGTTCTTAAGTTTCCACAGGTGCCAAGTAGCTTACCAATGAAACTTTCGGCCCATTTTTCTATTCCATCAACAATTAATATTGTTAGGCAGCATATTTCTTATTCGCAAGCTAAGTATGGTTTGATATCTGCAGAGGAGGAACAGGTTTTACAAATGGATTTCGACAAATTGTTGCATGAGGAGTCTAAGACTCCTCCAAAAGACCTTCATCCAGCTACAAGCGTCTCCTCTTCTGTTCAGTCTGGACAATCAGATTATGCTTCTAGCAATAATGTTTCTGTATCCCAAGCTGGAGTCACGTTAACACCTGAGCTTATCGCCACTCTAGCTTCTTTACTTCCTTCAGCTTCACAGACTTCTGCCACTGATGGTACCAAGTCAGCATTAGGCTCGTCAACTGTGAATCCTTCACTTCCCAGTGCTGCACCTAATGATGGAACCCATTCCTATTTATGGAAAGAGGATCATCGAGTTGCAGAAGCATGCAGTCATCCTCCTCCAAAGTTGGGTAAAGTGTATAATCTACAGAGTCCTCATTTTCATCCTTATCTTCCTCCCTCTACTCCTGGCCACCCTTCTCAAATGGGCACTAGCAGTTTATATATCCAAGACTCTTCCACCAGCCAACAGCTGGAGTGTGCTGTTTCATCTGGACCCGTTGCTAATTTTATGATACCTTCTCAAAGTGGACAGATAGCTGTATTTCCCCAAGTCAGCCAGCTGTTAGAGGCTGAAGTCTCCCCTAGCACTGAGAAAGGTAATGAAGTGATGCAGGGGGCCAATGCTTCTGGTTTATATCAAGGTTTTAAATTTTCTCTGGTTTTCCAGCAACCTAATACTGCTGTTGCCTCATACAATGTGGTTTATGGTATTGATCCTTCACAACAAACTGTCATGCTATATAATGTAGAATTTGAGAAGAAGGAAGTTCAGTCTTCTCCTTTTGGTGCTGATGAGGGTGAGTCAGAAGTGGAGGCTGACAGGAACCAGAGATACCAATCGACATTACAATTAGCTGCCAGCCTTCTCCGCCAAATACAGCAACAACAACAGCAGCAGCAGCAAACATAA 3078 0.4327 MLLPKSSNPVQERDGSSEETEVLSNDLWIGDLSSDVSQSDLMALFAPFGPLYSVIRSSARRYGFVFFKNMEDAKAAKNALQGTLLQGNPVKIKFARPVGSSFCAFLALDTSYKIPLLGYRDIYSCDVCLDSCVLCPGKAMQKSVGDENHEWEVYRWGPYLCRLLSIRVLKKSKFVLRMDLLLDYGKFQGKSLGPTDLYTGQKRPKCIQSSVNKEDGQPSNILWIGYPSSVQIDEQMLHNAMILFGEIERITCYPSRNYSFVEFKSMDEARCAKEGLQGRLFNDPRITIMYSSSKLKPGKDFSDLYPRSKGLRPDIFLSTHQFQPLQMDVFGHSHPMVRNNFPGQLPLGGVIGSNAPMRPYGPQGSNIPLISGPELDDPGACYKYQDGSTRSQMGPNWKRPSPPASGMLPYLSATRPATRSSSIAWDVFDIKQCQGDSKRSRMDGALLVDNATFPLRNFDDCGLGPKQSYGIDPVISGGVSGPYVNIHGNIHLGSEGSRITAGVPSLVHPDIDHIWRGVIAKGGTPVCYARCIPVGKGIGIELPKVTRVYSRRHKLPNEGEGAEGNIPKGELAQGEGLDYXPEVVDCSARAGLDMLTKHYADAIGFEIVFFLPDSEDDFASYTEFLCYLSTKYRAGIAKLIDGTTLFLIPPSDFLTKVLKVTGPERLYGVVLKFPQVPSSLPMKLSAHFSIPSTINIVRQHISYSQAKYGLISAEEEQVLQMDFDKLLHEESKTPPKDLHPATSVSSSVQSGQSDYASSNNVSVSQAGVTLTPELIATLASLLPSASQTSATDGTKSALGSSTVNPSLPSAAPNDGTHSYLWKEDHRVAEACSHPPPKLGKVYNLQSPHFHPYLPPSTPGHPSQMGTSSLYIQDSSTSQQLECAVSSGPVANFMIPSQSGQIAVFPQVSQLLEAEVSPSTEKGNEVMQGANASGLYQGFKFSLVFQQPNTAVASYNVVYGIDPSQQTVMLYNVEFEKKEVQSSPFGADEGESEVEADRNQRYQSTLQLAASLLRQIQQQQQQQQQT 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1107 1025 CDD SPOC_FPA-like 514 672 - -
Dere07g1107 1025 Gene3D - 4 101 IPR012677 -
Dere07g1107 1025 PANTHER RNA RECOGNITION MOTIF-CONTAINING 21 545 - -
Dere07g1107 1025 MobiDBLite consensus disorder prediction 380 402 - -
Dere07g1107 1025 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 97 IPR000504 GO:0003723
Dere07g1107 1025 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 293 IPR000504 GO:0003723
Dere07g1107 1025 MobiDBLite consensus disorder prediction 725 758 - -
Dere07g1107 1025 MobiDBLite consensus disorder prediction 849 868 - -
Dere07g1107 1025 SUPERFAMILY RNA-binding domain, RBD 26 99 IPR035979 GO:0003676
Dere07g1107 1025 Pfam SPOC domain 509 664 IPR012921 -
Dere07g1107 1025 Coils Coil 1001 1025 - -
Dere07g1107 1025 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 286 IPR000504 GO:0003723
Dere07g1107 1025 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 90 IPR000504 GO:0003723
Dere07g1107 1025 Gene3D - 206 299 IPR012677 -
Dere07g1107 1025 MobiDBLite consensus disorder prediction 787 813 - -
Dere07g1107 1025 SMART rrm1_1 26 93 IPR000504 GO:0003723
Dere07g1107 1025 SMART rrm1_1 221 289 IPR000504 GO:0003723
Dere07g1107 1025 MobiDBLite consensus disorder prediction 787 818 - -
Dere07g1107 1025 MobiDBLite consensus disorder prediction 980 999 - -
Dere07g1107 1025 CDD RRM_SF 27 93 - -
Dere07g1107 1025 MobiDBLite consensus disorder prediction 738 758 - -
Dere07g1107 1025 SUPERFAMILY RNA-binding domain, RBD 215 297 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1107 Dere-ChrDere07 14429523 14438445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1107 15 322 Eukaryotic Initiation Factors Gene Family AT4G34110 23.121 1.76e-09 59.7