Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1091 ATGGGACCACGGACAGCCAGCAACACACGCGCGCCCATAGCCGTTGATGTAATGCAACGCAATGTTTCTTCTCATCCTCTAATGCCAACTATTTTGGTCTCAGTCTTCCATCTGTGCAACCTTCTTCATTCGTTCTTCCTCTATCTGCTCCCTAAAAAGCTTCTACCCTTCCTTCCTCACTCTTCCCTCTCCCACCAACAAAAACCTCTCGTTGATACCACACCACCTTCATCTTCCTCTTCCTCTTCCTCTTCTTCATCAAGCTCGTGGGCCCTCAAGAGAATGGACCCCATCGAGCTCAAGCGCGTTTTCCAGATGTTCGATCGGAATGGGGATGGGCGAATCTCCAAGAAGGAGCTGAGTGACTCCCTTGAGAGCCTCGGCATTTTCATCCCCGACAAGGATTTGTGGCAAATGATCGAGAAAATCGACGTTAACGGCGATGGGTGTGTGGACATAGAGGAGTTCGGTGAGCTGTACCAGTTGATAATGGAGGAACGTAATGAAGAGGAGGACATGAGGGAGGCATTCAACGTGTTTGATCAAAACGGTGACGGATTCATCACCGTGGATGAGTTGAGATCAGTGCTATCGTCACTCGGGCTGAAACAGGGGGGAGCAATGGAAGATTGCAAGACGATGATAATGAAGGTGGATGTGGATGGAGATGGGAAGGTCAATTACAGCGAGTTCAAGCAAATGATGAAGGGAGGTGGCTTCGGTGCTCTCGGCTAA 735 0.498 MGPRTASNTRAPIAVDVMQRNVSSHPLMPTILVSVFHLCNLLHSFFLYLLPKKLLPFLPHSSLSHQQKPLVDTTPPSSSSSSSSSSSSSWALKRMDPIELKRVFQMFDRNGDGRISKKELSDSLESLGIFIPDKDLWQMIEKIDVNGDGCVDIEEFGELYQLIMEERNEEEDMREAFNVFDQNGDGFITVDELRSVLSSLGLKQGGAMEDCKTMIMKVDVDGDGKVNYSEFKQMMKGGGFGALG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1091 244 CDD EFh 172 236 IPR002048 GO:0005509
Dere07g1091 244 ProSitePatterns EF-hand calcium-binding domain. 219 231 IPR018247 -
Dere07g1091 244 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 171 236 - -
Dere07g1091 244 FunFam Calmodulin-like protein 5 78 169 - -
Dere07g1091 244 Pfam EF-hand domain pair 170 236 IPR002048 GO:0005509
Dere07g1091 244 Pfam EF-hand domain pair 99 161 IPR002048 GO:0005509
Dere07g1091 244 SUPERFAMILY EF-hand 98 237 IPR011992 -
Dere07g1091 244 Gene3D - 61 159 - -
Dere07g1091 244 CDD EFh 99 156 IPR002048 GO:0005509
Dere07g1091 244 SMART efh_1 135 163 IPR002048 GO:0005509
Dere07g1091 244 SMART efh_1 172 200 IPR002048 GO:0005509
Dere07g1091 244 SMART efh_1 99 127 IPR002048 GO:0005509
Dere07g1091 244 SMART efh_1 210 238 IPR002048 GO:0005509
Dere07g1091 244 Gene3D - 160 238 - -
Dere07g1091 244 FunFam calmodulin-like protein 3 170 239 - -
Dere07g1091 244 MobiDBLite consensus disorder prediction 66 89 - -
Dere07g1091 244 PRINTS Parvalbumin signature 218 231 - -
Dere07g1091 244 PRINTS Parvalbumin signature 159 177 - -
Dere07g1091 244 PRINTS Parvalbumin signature 181 197 - -
Dere07g1091 244 ProSitePatterns EF-hand calcium-binding domain. 181 193 IPR018247 -
Dere07g1091 244 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Dere07g1091 244 ProSiteProfiles EF-hand calcium-binding domain profile. 168 203 IPR002048 GO:0005509
Dere07g1091 244 ProSiteProfiles EF-hand calcium-binding domain profile. 131 166 IPR002048 GO:0005509
Dere07g1091 244 ProSitePatterns EF-hand calcium-binding domain. 144 156 IPR018247 -
Dere07g1091 244 ProSiteProfiles EF-hand calcium-binding domain profile. 206 241 IPR002048 GO:0005509
Dere07g1091 244 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1091 Dere-ChrDere07 14333637 14336033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1091 32 242 EF-hand Containing Proteins AT2G43290 63.426 7.29e-85 250