Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1081 ATGTATCCAAAGCAGTCTAGCAAAGGGGATGGTCCTGTTTCCAGGCCTGTGCGCTCAAGTAGTAGGATAAAAACAAGGCCTAATGTGTATGGCACACCATACTTGTATTATAACTCAAATCTTAAGCGCTCAAGGAGAAGCAAGAACAAGACAAGAATAGCTGCTGCACAGATTGCTAAGATGTTGCATCCAAAGAATCGGCCAGCGCAAGATTCAAATACTAATTCTGCCTCTACCAACCTTAGACGTTCAACTAGGAAGAGAAGGCTTTCTGTAAATCTTGAAGATTTCACGGATAGTTCTGGAGCTGAGGATGAAGATTTAATGAGACCCACATATCGCCCATTGAGAACCCAGATTGACAATAGCATCAGTCAAGATGAGTTGATGTCTCCCAAGTGCAAAAGAGCTGTGAAAACTAAACCAATGCCTCGACGTGAAGGTCTAAGACCTCGTCGTTTGAAGGCAATTGCTAGAGAAAATTTGAATTTGGAATCAGATGATGAGCAAGATCTTTCAGAAGAGAAGGTTGGGCAAGATGAAACAGAAAATGAGCTTGATGTTGAGGAAGACGATGCAAATGATGGCCAGAATGAGATTGAAGGGGATGCTGAGGGTGAAGATGAAGGAGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAACAGGATGGAAAAAGGCGCTATGATCTTCGAAATCGTGCAGAAGTTCGTAGGCTATCTGTGGATGAAAGGAAGGCTCAGTTGAGATCTCCTCGAAGAGTGCTACATCAAGGTATGGGCTCTAAAGTCAACAGGGATGTAAGGAAGAGTGGATCACAAGTTCACAAGCGTCATCGTCTTGCGAGACCTGATGATTCTGATGACTCCATTCTTGTGGATGAGCTGGACCAAGGTCCTGCTATTCCATGGAGTCGAAGTAGCAGCAGATCTGGCCCTCCTTGGCTTTTTGGGGGATTAGACATGCATGGAACAACAGCTTGGGGATTGAATCTTGCTGCATCAGGTTGGGGTCACCAGGGTGATGCTTTGGCTACCTTGACATCTGGGATTCAAACTGCTGGACCAAGCTCCAAGGGAGGGGCAGATATCCAACCTATACAGGTTGACGATGGTGTTAGTTTTGATGATATAGGTGGACTCTCTGAATACATTGATGCTCTCAAGGAAATGGTTTTCTTTCCTTTACTGTATCCAGATTTCTTTGCAAGTTACCACATTACTCCACCTAGGGGTGTGTTGTTATGTGGGCCGCCTGGCACAGGAAAAACATTAATTGCCAGAGCTTTGGCATGTGCTGCTTCAAAAGCTGGCCAGAAGGTTAGCTTTTACATGCGTAAAGGAGCAGATGTACTGAGCAAGTGGGTTGGTGAGGCTGAAAGACAGTTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGACGAAATAGATGGACTTGCACCTGTGAGGTCTAGTAAGCAGGAACAAATTCACAATTCCATTGTGTCCACCCTGCTTGCTTTAATGGATGGTCTTGATTCTCGTGGACAGGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCTTTGCGGCGTCCTGGTAGATTTGATCGGGAATTTAATTTTCCCTTGCCTGGTTGTGAGGCACGAGCTGAAATATTAGATATTCATACTCGCAAATGGAAGAATCCTCCTACTGATGAACTGAAAAGAGAACTTGCAGCTAGTTGTGTAGGATATTGTGGTGCTGACCTGAAGGCTCTCTGTACTGAGGCTGCCATTCGTGCTTTTCGTGAAAAATATCCACAGGTTTATACAAGTGACGACAAATTTCTCATAGATGTTGATTCTGTCAAGGTTGAAAAGTATCACTTTATTGAAGCAATGTCAACAATTACTCCTGCTGCTCATAGGGGTGCCATTGTGCAATCTCGGCCTTTGTCTCCAGTAGTTCTACCATGTCTACAAAGATATCTGGAGAAAGTCTTGAATATCATATCTGATATTTTCCCTCAAGTTGTTGTTGCATCAGAATTGAGCAATCTTTCAATGCTTTCATATGGTTCTGCAATTCCTCTGGTGTATCGGCCTAGGCTTCTACTTTGTGGTGGTGAAGGTACTGGACTGGATCATCTTGGGCCTGCTGTTTTACACGAACTGGAAAAATTTCCTGTTCATTCATTAGGACTTTCATCTCTTCTATCTGATCCTAGTGCAAAGACACCGGAGGAGGCATTGGTACATATATTTAGTGAAGCTAGGAGAACAACACCATCAATTCTCTATTTACCGCAGTTTGATGTTTGGTGGGCAACAGCAGATGAACAGCTCAGGGCTGTTCTCTTGACTTTGCTAGAAGAATTGCCATCTGACTTACCTATATTACTACTCGGAACATCTTCAGTTATACTTGCTGAAGTTGAAGTGCCTCCTTCAGTTTTCCCTCAACATTCAGTCTATCAAGTGGACATACCATCTACTGAAGATAGGACTTCATTTTTCAATCGTTTGATAGAAGCTGCTTTGTCAGTCTTGCCAGAGGTAATGAGCAAAAAATCCAAGGACATGGGATCCCTACCTGAACTCCCCAAGGCACCGAAATTGGCAAGTGGTCCAAAGGTATCTGAGTTAAAAGCAAAGGTTGAAGCTGAGCAGAATGCCCTTCGTAGGTTGCGGATGTGCCTTCGAGATGTTTGTAACCGGATATTATATGACAAGCGGTTTAATGCCTTCCACTATCCAGTCTCAGATGAAGATGCACCTAATTATCGCTCAATTATCCAAAATCCAATGGATATGGCTACCATGCTGCAACATGTTGATAATGGCCACTACATTACATGTTCAGGATTTCTGCAGGATATTGATCTTATTGTTTCCAATGCCAAGGCTTACAATGGTGAAGACTACAATGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTTCGCGACGCAGTGCATGGGATGCTCTCACAGATGGATCCTGCACTGGTTGCTTATTGTGACAAGATTACTGCCCAGGGTGGCCCAGTTCATATGCCTGATGAATTAAGGGGGTCTACATTCCCTTCTACTTCTGTTGTTCAGCTGGGCAACACTGCTAGAATGAGTGCTCGGCTCCGTAATGTCCAACCAGAGGTTAATATGGATCAAAGCTATGAAGTTCTGAAGCGGACAAAGAAGAGCTCTGATGTTGCACATGCAGAAGATAGGTCACTACCCGACTCTCTGCTGTCGAAGTCTTCACAGGAACATCAGGCGAATGATGTAACTTCAGAAAGGCTTGCACCTGCCTCAGTTGATGGCGATCTGCATGCAACTTCTACAAGTTGCCATGCTGATAGGAGCAATTCTGAAGATGTTACAATGTCTTATGGTGGATTCTCAAACAAAGTGGAGTCTGTAAAGCAGCTTTTTGTGAAGCGCAGTGAAAATTACACCATTCCGCAGCTTGAAAGAATTTATACCAGAGTTATTAAGGGCGTTTTCGAAATCGAAGATAAAGGACTGAAAGATGGTCCGAATACTTCGGTTTTGAGGTTTTTGTCCAAATTTGTAGATGATGATGCAAACTTCTGA 3591 0.4358 MYPKQSSKGDGPVSRPVRSSSRIKTRPNVYGTPYLYYNSNLKRSRRSKNKTRIAAAQIAKMLHPKNRPAQDSNTNSASTNLRRSTRKRRLSVNLEDFTDSSGAEDEDLMRPTYRPLRTQIDNSISQDELMSPKCKRAVKTKPMPRREGLRPRRLKAIARENLNLESDDEQDLSEEKVGQDETENELDVEEDDANDGQNEIEGDAEGEDEGDEDGDDEEGEEEQDGKRRYDLRNRAEVRRLSVDERKAQLRSPRRVLHQGMGSKVNRDVRKSGSQVHKRHRLARPDDSDDSILVDELDQGPAIPWSRSSSRSGPPWLFGGLDMHGTTAWGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPIQVDDGVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKNPPTDELKRELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSVKVEKYHFIEAMSTITPAAHRGAIVQSRPLSPVVLPCLQRYLEKVLNIISDIFPQVVVASELSNLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLSSLLSDPSAKTPEEALVHIFSEARRTTPSILYLPQFDVWWATADEQLRAVLLTLLEELPSDLPILLLGTSSVILAEVEVPPSVFPQHSVYQVDIPSTEDRTSFFNRLIEAALSVLPEVMSKKSKDMGSLPELPKAPKLASGPKVSELKAKVEAEQNALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATMLQHVDNGHYITCSGFLQDIDLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKITAQGGPVHMPDELRGSTFPSTSVVQLGNTARMSARLRNVQPEVNMDQSYEVLKRTKKSSDVAHAEDRSLPDSLLSKSSQEHQANDVTSERLAPASVDGDLHATSTSCHADRSNSEDVTMSYGGFSNKVESVKQLFVKRSENYTIPQLERIYTRVIKGVFEIEDKGLKDGPNTSVLRFLSKFVDDDANF 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1081 1196 CDD RecA-like_Yta7-like 377 546 - -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 1107 1123 - -
Dere07g1081 1196 ProSitePatterns AAA-protein family signature. 518 536 IPR003960 GO:0005524|GO:0016887
Dere07g1081 1196 MobiDBLite consensus disorder prediction 12 30 - -
Dere07g1081 1196 FunFam ATPase family AAA domain-containing protein 884 1012 - -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 243 292 - -
Dere07g1081 1196 CDD Bromo_AAA 892 1002 - -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 1079 1097 - -
Dere07g1081 1196 SUPERFAMILY Bromodomain 891 1004 IPR036427 GO:0005515
Dere07g1081 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 697 908 IPR027417 -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 1062 1123 - -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 67 81 - -
Dere07g1081 1196 PRINTS Bromodomain signature 924 940 IPR001487 GO:0005515
Dere07g1081 1196 PRINTS Bromodomain signature 940 958 IPR001487 GO:0005515
Dere07g1081 1196 PRINTS Bromodomain signature 958 977 IPR001487 GO:0005515
Dere07g1081 1196 Coils Coil 878 898 - -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 141 166 - -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 61 90 - -
Dere07g1081 1196 Gene3D - 371 641 IPR027417 -
Dere07g1081 1196 Pfam AAA+ lid domain 576 612 IPR041569 -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 1062 1078 - -
Dere07g1081 1196 Pfam ATPase family associated with various cellular activities (AAA) 413 548 IPR003959 GO:0005524|GO:0016887
Dere07g1081 1196 FunFam ATPase family AAA domain-containing protein 2B 549 634 - -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 121 230 - -
Dere07g1081 1196 Pfam Bromodomain 905 973 IPR001487 GO:0005515
Dere07g1081 1196 Gene3D - 678 840 IPR027417 -
Dere07g1081 1196 Coils Coil 179 199 - -
Dere07g1081 1196 Gene3D - 549 634 - -
Dere07g1081 1196 PANTHER AAA DOMAIN-CONTAINING 47 1009 IPR045199 -
Dere07g1081 1196 Gene3D - 884 1012 IPR036427 GO:0005515
Dere07g1081 1196 SMART bromo_6 892 999 IPR001487 GO:0005515
Dere07g1081 1196 ProSiteProfiles Bromodomain profile. 915 977 IPR001487 GO:0005515
Dere07g1081 1196 SMART AAA_5 409 550 IPR003593 GO:0016887
Dere07g1081 1196 FunFam ATPase family, AAA domain-containing 2 371 554 - -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 167 220 - -
Dere07g1081 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 638 IPR027417 -
Dere07g1081 1196 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1081 Dere-ChrDere07 14230657 14239824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1081 359 613 Calmodulin-binding Proteins AT3G56690 35.907 2.86e-41 163