Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1025 ATGGGAGCTCGTTGCTCGAAATTCTCACTATGCTGGTGGTCCTCTAATATCAAATCAAATCTTCATGACTTGTCTGATAATGATGACGGGAACAAGAATGAAAAGCCTGGAATCATAGAGTACAGCTTGGATCAACTAAGAAGTGCCACTTCAGGATTTTCTCCCGACAACATAGTGTCAGAGCACGGTGAGAAAGCTCCCAATGTTGTCTATAAAGGAAAACTTGAAGATGACAGGTGGATTGCTGTGAAGCGCTTCAACAAGTCGGCTTGGCCTGATTCTCGACAATTCCTAGAGGAAGCACGAGCAGTGGGGCAGCTTCGGAATGAGCGATTAGCTAACTTGTTGGGGTGTTGCAGCGAAGGGGAAGAGAGACTGCTTGTTGCTGAGTTTATGCCCAATGAAACTCTCTCCAAACATCTTTTTCATTGGGAGACCCAGCCTATGAAATGGGCAATGAGGCTGAGAGTTGCCTTTTACTTGGCCCAAGCATTGGAATACTGCAGCAGTAGAGGAAGGTCATTGTACCATGATCTTAATGCTTACAGAATTTTGTTTGATCGGGATGGCAATCCCAGACTCTCCTGTTTTGGACTCATGAAGAACAGCAGAGATGGCAGGAGCTATAGTACTAACTTAGCCTTCACCCCTCCAGAGTACTTGAGGACAGGAAGAATCACCCCAGAAAGTGTTATATACAGTTTTGGCACCCTTTTGCTTGATCTTCTCAGTGGCAAACATATCCCACCCAGTCATGCACTTGATCTTATACGAGGCAAAAATTTTTTGATGCTCATGGACTCATGTTTGGAAGGCCATTTTTCAAATGATGATGGAACTGAATTAGTGAGATTAGCTTCACGATGTTTACAGTATGAACCACGCGAGAGGCCAAATGCCAAGTCACTCGTGACTGCTCTAACTCCTCTTCAGAAAGAAACTTCTGTACCATCAAATGTTTTGATGGGCATACCAGATGGGAGTGCATCAACAAAGGAAACAGTTTCATTGACACCTTTTGGTGAAGCTTGTTCTAGAAGAGACTTCACTGCAATACATGAAATTTTGGAAAAGGTGGGGTACAAGGATGATGAAGATGTTGCAAACGAGCTTTCCTTCCAAATGTGGACAAATCAAATACAAGAAACACTCAATTCTAAGAAGCAAGGAGATTCTGCTTTTCGTGCTAAAGACTTCTCTACGGCCATTGACTGCTATACACAATTCATCGATGGAGGGACTATGGTATCACCAACTGTGTACGCCAGGCGCTGCTTATGTTACTTGATGAATGACATGCCACAAGAAGCTCTTGGAGATGCCATGCAAGCCCAATCGGTATCTCCCACCTGGCACACTGCCTTCTATCTTCAAGCAGCTGCCCTTTTCACCCTTGGAATGGACAATGATGCACAGGAAAGTCTTAAAGATGGCACAATGCTGGAAACCAGGAAGCTTAGATATTAA 1467 0.441 MGARCSKFSLCWWSSNIKSNLHDLSDNDDGNKNEKPGIIEYSLDQLRSATSGFSPDNIVSEHGEKAPNVVYKGKLEDDRWIAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLLGCCSEGEERLLVAEFMPNETLSKHLFHWETQPMKWAMRLRVAFYLAQALEYCSSRGRSLYHDLNAYRILFDRDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNAKSLVTALTPLQKETSVPSNVLMGIPDGSASTKETVSLTPFGEACSRRDFTAIHEILEKVGYKDDEDVANELSFQMWTNQIQETLNSKKQGDSAFRAKDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMPQEALGDAMQAQSVSPTWHTAFYLQAAALFTLGMDNDAQESLKDGTMLETRKLRY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1025 488 FunFam probable serine/threonine-protein kinase At4g35230 28 131 - -
Dere07g1025 488 Gene3D Transferase(Phosphotransferase) domain 1 133 325 - -
Dere07g1025 488 SUPERFAMILY TPR-like 385 483 IPR011990 GO:0005515
Dere07g1025 488 ProSiteProfiles Protein kinase domain profile. 56 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g1025 488 Gene3D Tetratricopeptide repeat domain 381 487 IPR011990 GO:0005515
Dere07g1025 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 485 IPR045845 GO:0004672|GO:0009742
Dere07g1025 488 FunFam probable serine/threonine-protein kinase At4g35230 381 488 - -
Dere07g1025 488 Pfam Protein tyrosine and serine/threonine kinase 69 307 IPR001245 GO:0004672|GO:0006468
Dere07g1025 488 Gene3D Phosphorylase Kinase; domain 1 27 131 - -
Dere07g1025 488 FunFam probable serine/threonine-protein kinase At5g41260 133 324 - -
Dere07g1025 488 SUPERFAMILY Protein kinase-like (PK-like) 34 313 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1025 Dere-ChrDere07 13723122 13726914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1025 37 312 Receptor kinase-like Gene Family AT3G58690 32.680 2.56e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Dere07g1025 PK_Tyr_Ser-Thr 9.4e-27 CL0016