Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g1006 ATGGAGTCTGAAGATCACGCAACACCAGAAACAAAGGCCAGCGAGGAACAAGGAGGAAGCCAAGTGACAAGGTCCTACGAGTGCACCTTCTGTAAAAGGGGATTCTCTAATGCACAAGCATTGGGAGGGCACATGAACATACACAGGAAAGACAAAGCCAAGCTGAAGCAATCTTCAAACGAACCTCATCATCATCAGCCATCTTTGAACATTCACAAGGTTGAAGAGAGAACCAACCCTAACTGGCCTACTTGGAATATGGATTCTTCTTCAAGGGATGAAGCCCACATAGTTCACATAAGGCAGCTCCCACTATTTGCAGAAACGCCTTGTGGTGAAACTCAAAAGCCAGAAGAATTAGATCAAATTCATGATAGAGGAATTGCTGAAGAAATTAAGGGCTTGCCTTCTGGCCAAGGTTCGTCATCGGATTTAGACCTTGAACTAAGACTAGGGCCACAGGATCCCTCTCCAACTATTAGTACTCGAAAATTCTTTTGA 501 0.4451 MESEDHATPETKASEEQGGSQVTRSYECTFCKRGFSNAQALGGHMNIHRKDKAKLKQSSNEPHHHQPSLNIHKVEERTNPNWPTWNMDSSSRDEAHIVHIRQLPLFAETPCGETQKPEELDQIHDRGIAEEIKGLPSGQGSSSDLDLELRLGPQDPSPTISTRKFF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g1006 166 Pfam C2H2-type zinc finger 26 50 - -
Dere07g1006 166 MobiDBLite consensus disorder prediction 73 89 - -
Dere07g1006 166 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Dere07g1006 166 SMART c2h2final6 26 48 IPR013087 -
Dere07g1006 166 MobiDBLite consensus disorder prediction 51 72 - -
Dere07g1006 166 Gene3D Classic Zinc Finger 4 81 - -
Dere07g1006 166 PANTHER OS07G0101800 PROTEIN 9 154 - -
Dere07g1006 166 MobiDBLite consensus disorder prediction 1 22 - -
Dere07g1006 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Dere07g1006 166 SUPERFAMILY beta-beta-alpha zinc fingers 24 53 IPR036236 -
Dere07g1006 166 MobiDBLite consensus disorder prediction 51 89 - -
Dere07g1006 166 MobiDBLite consensus disorder prediction 132 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g1006 Dere-ChrDere07 13557581 13558081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g1006 19 162 C2H2 Transcription Factor Family AT3G53820 38.255 8.58e-19 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere07g1006 zf-C2H2_6 9.2e-06 CL0361