Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0995 ATGGCATCTCCTACGGCGTCGTATTGGTGCTACAGCTGCACCCGCTTTGTTCGCCTCTTGGATGAGCACGACGTCGCTTGCCCCCACTGTCAAGGCGGGTTCGTTGAAGAGATTCACAACAACCCTTCTTCCGATCGTCCTCATCTCAGCCCCTTTCCGCCTACTATGTTCGCCGATGGGCCTCCGACTTCCTATGATTTCAGCAGACAAGGGTTCCGTCGAAGACGCCGCAACGCCGGCAACAGATCTCCCTTTAACCCTGTTATCGTTCTCCGTGGACTCGCCGATGGTGCCGGCGGCGAGAACGGCGGTGGCGGTGAGCAAGAGGAAAGTACTTTCGAATTGTACTACGACGACGGAGATGGTTCCGGTCTCCGACCACTGCCACCGGCTATGTCTGAGTTCTTGTTAGGGTCAGGATTCGAACGGCTTCTGGAGCAGTTTGCCCAGATCGAAATGAATGGATTCGGGCGACCCGAGAATCCGCCCGCTTCTAAAGCGGCCATAGAATCGATGCCGACGATTGAGATTGGAGAGACCCATGTGGGTTCCGATGCACACTGTGCCGTGTGCAAGGAAGCGTTTGAACTCGGTACGGAGGCGCGTGAAATGCCCTGCAAGCACATATACCACTCGGACTGCATTCTCCCGTGGCTTTCAATGCGCAATTCGTGTCCCGTGTGCCGCCACGAGCTGCCTTCGGATCGCAACACATTAGATAGTGGAATATCGGGGCAAATCGAAGATGAAACTGTAGGGTTAACGATTTGGAGGCTACCAGGTGGCGGCTTTGCCGTTGGAAGGTTTTCTGGCGGTCGCAGAACCGGTGAGAGCCATTTTCCTGTCGTATACACAGAAATGGACGGTGGACTCAATGCAAATGGAGCTCCGAGGACGATTTCCCGGGCAGCGAGAAGCACCAGAGTTAGAGAAAGTCGTGGATTTGGCAGAATAGTTCGCAACGTCTTGTCATTCTTCGGGATGCGTCGGTCTAGGTCAAATTCATCTTCATATTCTGGTTCTGAACACGAGTCCATGAGTATAAGTCGTAGCCGTTCGGGTTCATTATTCGGTAGGAACTCGAGGAGGCGCAGCAGAACTTGGGTTTTGGAAGATTGA 1119 0.5389 MASPTASYWCYSCTRFVRLLDEHDVACPHCQGGFVEEIHNNPSSDRPHLSPFPPTMFADGPPTSYDFSRQGFRRRRRNAGNRSPFNPVIVLRGLADGAGGENGGGGEQEESTFELYYDDGDGSGLRPLPPAMSEFLLGSGFERLLEQFAQIEMNGFGRPENPPASKAAIESMPTIEIGETHVGSDAHCAVCKEAFELGTEAREMPCKHIYHSDCILPWLSMRNSCPVCRHELPSDRNTLDSGISGQIEDETVGLTIWRLPGGGFAVGRFSGGRRTGESHFPVVYTEMDGGLNANGAPRTISRAARSTRVRESRGFGRIVRNVLSFFGMRRSRSNSSSYSGSEHESMSISRSRSGSLFGRNSRRRSRTWVLED 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0995 372 SMART ring_2 188 228 IPR001841 -
Dere07g0995 372 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
Dere07g0995 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Dere07g0995 372 MobiDBLite consensus disorder prediction 331 358 - -
Dere07g0995 372 Pfam Ring finger domain 187 229 IPR001841 -
Dere07g0995 372 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Dere07g0995 372 Pfam Protein of unknown function (DUF1117) 252 362 IPR010543 -
Dere07g0995 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 233 - -
Dere07g0995 372 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Dere07g0995 372 CDD RING-H2_RNF126-like 188 229 - -
Dere07g0995 372 SUPERFAMILY RING/U-box 168 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0995 Dere-ChrDere07 13450517 13451635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0995 127 242 C3H Transcription Factor Family AT5G01980 43.103 1.23e-27 111