Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0986 ATGGATCCAAACTTCGATGAAAGTTGTGGTTTTATAAACGGCTATAAACATGATGATGGCGCCATCGTCTCCAATTTAAACTATTTCTCATATCCGGTGAACGACTGGGAACTCGACGAACACTATGGGAACCTTAATTTCACAGGCGATCCTTTCTATCACCCTTATGCGGACCCAGTCAATTTTGCTACGAATACGAGCGTGAAGTTCGAAGGATCAGAGCGGTTAGTTTCATCATGGACTATGGACCCTGTAGGAGGTGTGTCAGATTTAGCAGCAGCACCTAGGACTTCGCTAGGGGATCCTTCGCTGGAAGACGCTGACTTTTCAGAAACCGTCCACTACATAAGCCAAATTCTTATGGAAGAGAACTTTGAACAGAAGCCTAGCATGTTCTATGATCCATTGAGTCTGCAAGTCACGGAGAAATCATTCTATGATGCTCTTAAAGAACAGCATCCTCTTTCCCCCAATCAACATCCCCTAGACATTCATCAGAATCTTGATAGCCCAGATGGGAATTGTCCTAGTAGTAGAAGTACTGATTCTGGCAGTAACAGTAGTAGCTCCAACAATTCTCATGAGGCTAACAAGCCCTCTTCACCGGATGCCCCAATCTCTGGTGATTTTGCTTCCCAATTAGATTCTCATTTCATCTCTGAGAAGCCCTCTCAACCTCCAAGTGTTTCCACTAATACCAGTGACGGACTGTTAGATTTGGATTCCTCTTTTACTAAGCTCTTGGCTCAAAATATATTTACTGATGCAGAATCTGTCTCACAGTTTAAGAGGGGGTTAGAAGAAGCTAGCAAGTTTCTTCCTAGAGGACCTCAACTTGTCACTGGTCTAGAGAGCAAGGTGCCTCCAGGGTCAAAGCGAGAGGCAAAAAGGGCAGTGGGTCGGGAGAATTCGCGTGGGTTGAAGGGTAGGAAGAATCACGAGCGTGAAGCTAGTGATACAGAAGGGAGAAGTAACAAGCAGTCAGCAGTGTATGTGGACGAGAGTGATATATCAGAAATGTTTGATCGAGTGTTGCTTAGTGTTGAGAATGTTCCACTGTGTGATGAACACAAACAGTTGCAGAATGGAACAGACAAAGCCAAGGAGCCAAGTGAGCAATCACATTCATCTGATGGAGGGAAGACTCGCTCTAAAAGACAAGGCAGGAAGAAGGAAACTGTGGATTTGAGGACTCTTCTGGTTCTATGTGCGCAAGCTGTGTCTGCAAATGACAGCAGAACTGCTAATGAACTACTAAAGCAGATTAGGCAGCATTCTTCCCCACTTGGCGATGCATCACAGAGGTTGGCTAATTACTTTGCCAATGGCCTTGAGGCACGTTTGGTTGGTGGTGGTACTGGAACACAAATATTTTATAGCTCTCTGAACTCCAAGAGGATTTCTGCTACTGATATCTTGAAAGCTTACTCAGTTCTGATATCTGCCTGCCCTTTTAAAAAGTTTGCATATTTCTTTGCAAATAAGATGATTATGAAAACAGCTGAAAAGGCAGAAGTTCTTCATATTATCGATTTTGGCATTCAGTATGGTTTCCAGTGGCCAATACTTATTAAGTTTCTTTCACAGAGAGCTGGTGGGCCTCCAAAGCTACGCATCACAGGGATAGAGATACCCCAAGGTGGCTTTCGTCCAGCTGAAAGAATTGAGGAGACTGGTCGACGTCTAGCCAATTATTGCAAACGTTTTGATGTTCCATTTGAATACATAGCAATAGCATCGCAAAACTGGGAAACCATCCCAATGGAGGACTTTAAGATTGAGAGTAATGAGCTGCTTGCTGTGAACTGTCTGACGAGATTTAAGAATTTAGTGGACGAGACAATTCAAGTAAACAGTCCTAGAAATGCAGTTTTGAATTTGATCAGGAAGATGAATCCAGATATTTTTGTTCAAACCATTGTCAATGGATCCTACAATGCACCTTTCTTTGCCACACGATTCAAAGAGGCGCTGTTCCATTTTTCTGCATTGTATGATATATTTGATACTGTCGTACCTCGTGACAATGAATGGAGGTTGATGGTTGAGAGAGAGTTTATTGGTCGGGAGGCCATGAACGTTGTAGCCTGTGAAGGGATTGAGAGGGTTGAGAGGCCTGAGACATACAAACAATGGCAAGTCAGGAATACAAGGGCTGGTTTTAGGCAGCTCCCACTGACTGAGGAGTTAATGGCCAAATTTAGGGAAAAGTTGAAGGCATGGTATCACAGAGATTTTGTAATTGATGAAGATAATAACTGGATGCTTCAAGGCTGGAAGGGCCGCATCTTGTTTGCTTCCGCAGACCGGATTAAAGGTCATGGTATTTCTGGGGATCCCAGCTTCTGA 2349 0.4368 MDPNFDESCGFINGYKHDDGAIVSNLNYFSYPVNDWELDEHYGNLNFTGDPFYHPYADPVNFATNTSVKFEGSERLVSSWTMDPVGGVSDLAAAPRTSLGDPSLEDADFSETVHYISQILMEENFEQKPSMFYDPLSLQVTEKSFYDALKEQHPLSPNQHPLDIHQNLDSPDGNCPSSRSTDSGSNSSSSNNSHEANKPSSPDAPISGDFASQLDSHFISEKPSQPPSVSTNTSDGLLDLDSSFTKLLAQNIFTDAESVSQFKRGLEEASKFLPRGPQLVTGLESKVPPGSKREAKRAVGRENSRGLKGRKNHEREASDTEGRSNKQSAVYVDESDISEMFDRVLLSVENVPLCDEHKQLQNGTDKAKEPSEQSHSSDGGKTRSKRQGRKKETVDLRTLLVLCAQAVSANDSRTANELLKQIRQHSSPLGDASQRLANYFANGLEARLVGGGTGTQIFYSSLNSKRISATDILKAYSVLISACPFKKFAYFFANKMIMKTAEKAEVLHIIDFGIQYGFQWPILIKFLSQRAGGPPKLRITGIEIPQGGFRPAERIEETGRRLANYCKRFDVPFEYIAIASQNWETIPMEDFKIESNELLAVNCLTRFKNLVDETIQVNSPRNAVLNLIRKMNPDIFVQTIVNGSYNAPFFATRFKEALFHFSALYDIFDTVVPRDNEWRLMVEREFIGREAMNVVACEGIERVERPETYKQWQVRNTRAGFRQLPLTEELMAKFREKLKAWYHRDFVIDEDNNWMLQGWKGRILFASADRIKGHGISGDPSF 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0986 782 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 329 764 IPR005202 -
Dere07g0986 782 MobiDBLite consensus disorder prediction 289 322 - -
Dere07g0986 782 MobiDBLite consensus disorder prediction 277 331 - -
Dere07g0986 782 MobiDBLite consensus disorder prediction 159 200 - -
Dere07g0986 782 Pfam GRAS domain family 396 766 IPR005202 -
Dere07g0986 782 MobiDBLite consensus disorder prediction 360 390 - -
Dere07g0986 782 MobiDBLite consensus disorder prediction 153 210 - -
Dere07g0986 782 ProSiteProfiles GRAS family profile. 387 771 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0986 Dere-ChrDere07 13363602 13366184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0986 112 768 GRAS Transcription Factor Family AT1G07530 50.505 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere07g0986 GRAS 1.6e-109 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1220 08 16318192 16321276 Dere07g0986 07 13363602 13366184 CCT
Dere07g0986 07 13363602 13366184 Dere08g1218 08 16308332 16311421 CCT