Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0985 ATGGATTCTCACCTTAACTCCAGTTCCATCACTCAATTCAACATCGACCAAGTGCCTGTTACGCTCAATTTTGATCAGTACACAAATCTCGTAAACAGAGTTAAATCCAGCGACCCATCCATAAGCTTGGGATCTATGGATAACCCATTTTTTCCACCCGATCCAAACTATGCTGGATATCATGCTTCCCCTTCTACCGTTAGTGCAGATGAGGATTCTCCCTTGGATGAGAATGACTTTTCTGGTACTGTCCTTCGCTACATAAACCAAATGCTGATGGAAGAGGACATGAAGGAGAAGCCATGTATGTTTCATGATTCCTTGTCTCTGCAAGCTGCTGAAAAATCATTCTATGAGGTTATTGGTGAGAAGTACCCCTCGTCATCGATCCATCATCATGCCGACAGTTCAGAGAACAATGTAGATGGTAGCTTCAGTGATTATTGTAGCAGTGGCGGTTATGGTACTAGCACTAGCAACTCTACCGATTTCCAGTGGAGTAATGTTGATGTTACAGAATACAAGCCTTCTATATTTCAAACCACTTTTGCTGCTAATTTTGTGTTTCAGTCCAGTTCAACTTCTAGTGCACAAGCTTCCATGACCAATCGGAGCAGCTTCACTAATAGCAAGAACGGGACGGTGGGTGTAGGGTCTTTCATCACCGAGTCTTTAGATTCTTCGTTGATTAGCAAGAGCGAGTCTGTATCGCAATTTGAGAGAGGTGTAGAGGAAGCCAGTAAGTTTCTTCCTAAGGGTAATCCATTGATTATTGATCTGGAGAGTAACACCTTTTCTTCCCCTCTTAGAAAAAATCAGCTGGTGGGAATTAAGACAGAGAAAATGGACAGGGAGCACTTGTCAACTGATTCAAAAGGGAGAAAGAACCATGAGCGGGAAGATGAGACCTACTTAGAAGATGGAAGAAGCAATAAGCAGTCAGCAATTTATGTGGAAGATTGTGAGCTGCCAGAATTATTTGATAAGGTACTGCTTGGTACTGGAGGGGGAAAAGATCCATTTTCTGTGGGTAATTGCAATCAAAACCATCAGAGTGGACCAGACATGAATGTGCAGCAAAATAAAGACGCAAATAAGTCTGGTGATGGAAAGACTCGCACAAGGAATCACAAGAAGAAAAATGAAGCTGTGGATCTGAGGACGCTACTGATTCTGTGTGCACAAGCTGTTTCATCTGATGATCGTGTCACTGCTAATGAGTTACTAAAGCAAATCAGGCAGCATTCTAGCTCACTCGGTGATGGATCTCAGAGGTTGGCTCATTGCTTTGCAAATGCCCTTGAAGCACGCTTAGCTGGCACTGGTACTCAGATTTATACTGCTTTATCCTCCAAAAGAACAACTGCTGCTGACATGATAAAGGCTTACCAAATGTATATCTCGGCCTGCCCGTTCAAGAAGCTTGCAATCATCTTTGCAAACCATACCATTTTGGCTCTGGCCAAAGATGTGGATACTCTTCATATTGTAGATTTTGGTATCCGTTATGGCTTCCATTGGCCTGCCCTTATCTATCGTCTCTCACAGCAACCTGGAGGGCCCCCCAAGTTGCGAATCACAGGGATAGAGCTGCCGCAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACTGGGTGTCGCCTGGCAAGGTATTGTGAGCGCTTCAATGTTCCATTTGAGTTCAACGCCATTGCACAAAAGTGGGAAACCATCAAAGTTGATGACCTGAAAATATTGAAAAATGAACTTCTAGTCGTGAACTGTCTGGTTCGATTTAAGAACCTACTTGATGAGACTGTTGTGTTGAATAGTCCAAGGTATACTGTTTTAAATCTAATTAGGAAGATAAACCCCAATATATTTATACATGGTATTGTCAATGGGAGCTATAATGCACCCTTCTTTGTGACCCGGTTCCGGGAGGCTCTCTTTCACTACTCTTCAATGTTTGATATGCTTGACACCAATGTTGAGCGTGAAGATCCAATGAGGTTGATGTTTGAAAAAGAGTTCTTTGGGCGGGAGGTAATGAATATTATAGCTTGTGAGGGTTTTGAGAGGATTGAAAGACCAGATACATACAAGCAATGGCAGGTTCGGAACATGAGGGCCGGGTTTAGGCAGCTACCCTTGGATAAACATCTCATTAACAAATTAAGGTGCAAGTTGAGAGATGCTTACCACAGTGATTTCATGCTTAATGAAGATGGAAACTGGATGCTACAAGGTTGGAAGGGTCGAATCGTTTATGCTTCCTCCTGTTGGGTGCCAGCATAG 2280 0.4329 MDSHLNSSSITQFNIDQVPVTLNFDQYTNLVNRVKSSDPSISLGSMDNPFFPPDPNYAGYHASPSTVSADEDSPLDENDFSGTVLRYINQMLMEEDMKEKPCMFHDSLSLQAAEKSFYEVIGEKYPSSSIHHHADSSENNVDGSFSDYCSSGGYGTSTSNSTDFQWSNVDVTEYKPSIFQTTFAANFVFQSSSTSSAQASMTNRSSFTNSKNGTVGVGSFITESLDSSLISKSESVSQFERGVEEASKFLPKGNPLIIDLESNTFSSPLRKNQLVGIKTEKMDREHLSTDSKGRKNHEREDETYLEDGRSNKQSAIYVEDCELPELFDKVLLGTGGGKDPFSVGNCNQNHQSGPDMNVQQNKDANKSGDGKTRTRNHKKKNEAVDLRTLLILCAQAVSSDDRVTANELLKQIRQHSSSLGDGSQRLAHCFANALEARLAGTGTQIYTALSSKRTTAADMIKAYQMYISACPFKKLAIIFANHTILALAKDVDTLHIVDFGIRYGFHWPALIYRLSQQPGGPPKLRITGIELPQPGFRPAERVQETGCRLARYCERFNVPFEFNAIAQKWETIKVDDLKILKNELLVVNCLVRFKNLLDETVVLNSPRYTVLNLIRKINPNIFIHGIVNGSYNAPFFVTRFREALFHYSSMFDMLDTNVEREDPMRLMFEKEFFGREVMNIIACEGFERIERPDTYKQWQVRNMRAGFRQLPLDKHLINKLRCKLRDAYHSDFMLNEDGNWMLQGWKGRIVYASSCWVPA 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0985 759 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 309 750 IPR005202 -
Dere07g0985 759 MobiDBLite consensus disorder prediction 281 308 - -
Dere07g0985 759 ProSiteProfiles GRAS family profile. 377 757 IPR005202 -
Dere07g0985 759 MobiDBLite consensus disorder prediction 366 380 - -
Dere07g0985 759 MobiDBLite consensus disorder prediction 341 380 - -
Dere07g0985 759 MobiDBLite consensus disorder prediction 341 365 - -
Dere07g0985 759 Pfam GRAS domain family 386 756 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0985 Dere-ChrDere07 13358245 13360524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0985 84 759 GRAS Transcription Factor Family AT1G07530 57.948 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere07g0985 GRAS 2.9e-113 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1218 08 16308332 16311421 Dere07g0985 07 13358245 13360524 CCT
Dere07g0985 07 13358245 13360524 Dere07g0985 07 13358245 13360524 ECH
Dere05g1052 05 16939682 16941730 Dere07g0985 07 13358245 13360524 ECH