Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0964 ATGGGTCAGGGTCTGAGCTGCGCAGGGAGCCATGAACATGGTCTCTTCACTGCTGTACAACATGGGGATATTGCGACTGTTAGAAATCTCCTACAGAGAGACCCAAGTCTCATGCACCACACTACTGTCTACGATCGCCATTCTGCTCTTCATATAGCCGCTGCTAATGGCCAGATCGAGATTCTGTCTATGCTGTTAGATGGATCTGTCAATCCAGATGTTTTGAATCGCCAAAAGCAGACGCCGCTCATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGAAAAAGCTCCTTGAAGTTGGAGCTAATGTATTGATGTTTGATTCGCTTTACGGCAGAACCTGCTTGCACTATGCCGCCTATTATGGTCATTCTTCTTGCCTTGAAGTAATTCTTTCTGCAGCACAATCTAGTCCAGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGAGATGGTAGAGGAGCAACACCATTGCACTTGGCAGCCCGTCAGAGACGGCCTGAATGCGTGCATATTCTATTAGACAGTGGAGCACTTGTCTGTGCTTCAACTGGCGGATACGGCTGTCCTGGGAGCACTCCTCTTCATTTAGCTGCCAGAGGGGGATCTCTGGATTGCATCCGTGAACTGCTGGCGTGGGGTGCAGATCGACTTCAACGTGATGCGTCAGGGCGGATACCATATATTGTTGCTCTGAAACACAAACATGGAGCATGTGCAGCGTTGCTTAATCCTACATCTGCTGAACCTCTTGTCTGGCCTTCACCTTTGAAGTTCATCAGTGAGCTCAATCCAGATGCCAAAGCATTATTAGAACGTGCCTTGATGGATGCAAACAAGGAAAGGGAGAAAAATATATTGAAAGGAAGTGCTTATTCTCTTCCATCCCCATCACATTCTGACGATGGGGTAGATGACAGTATCTCTGAGGCCAGTGAAACGGAACTGTGCTGCATCTGCTTTGAGCAGGTATGCACGATTGAGGTTCAGGACTGTGGCCACCAGATGTGTGCACAATGTACTCTAGCCCTCTGTTGCCACAACAAGCCCAATCCAGCTACTGCTTGCCTTACCCCACCAGTTTGTCCATTTTGCCGAAGCACCATAGCTAGACTGGTGGTTGTGAAGATAGAAAGTCAAGATGACACTGATCTAGATGCTGGAGATATCAGTTCTTCCAAGCTAAGTAAGTCAAAAAAATCCCGAAACTTGAATGATGGCGGTAGCAACAGCTTCAAGGGATTATCATTTGGAAAGATGGGTGGCCGCAGCTCTGGAAGGATTGCTGCTGAAAATGAGTGGGTTGATAAACAGTGA 1329 0.4771 MGQGLSCAGSHEHGLFTAVQHGDIATVRNLLQRDPSLMHHTTVYDRHSALHIAAANGQIEILSMLLDGSVNPDVLNRQKQTPLMLAAMHGKIACVKKLLEVGANVLMFDSLYGRTCLHYAAYYGHSSCLEVILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYIVALKHKHGACAALLNPTSAEPLVWPSPLKFISELNPDAKALLERALMDANKEREKNILKGSAYSLPSPSHSDDGVDDSISEASETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLVVVKIESQDDTDLDAGDISSSKLSKSKKSRNLNDGGSNSFKGLSFGKMGGRSSGRIAAENEWVDKQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0964 442 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 15 138 - -
Dere07g0964 442 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Dere07g0964 442 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Dere07g0964 442 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Dere07g0964 442 SUPERFAMILY Ankyrin repeat 15 250 IPR036770 -
Dere07g0964 442 SMART ANK_2a 194 223 IPR002110 GO:0005515
Dere07g0964 442 SMART ANK_2a 112 142 IPR002110 GO:0005515
Dere07g0964 442 SMART ANK_2a 157 186 IPR002110 GO:0005515
Dere07g0964 442 SMART ANK_2a 78 107 IPR002110 GO:0005515
Dere07g0964 442 SMART ANK_2a 45 74 IPR002110 GO:0005515
Dere07g0964 442 SMART ANK_2a 10 39 IPR002110 GO:0005515
Dere07g0964 442 CDD RING-HC_XBAT31-like 313 377 - -
Dere07g0964 442 MobiDBLite consensus disorder prediction 390 442 - -
Dere07g0964 442 Gene3D - 145 297 IPR036770 -
Dere07g0964 442 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Dere07g0964 442 Pfam Ankyrin repeats (many copies) 195 235 IPR002110 GO:0005515
Dere07g0964 442 Gene3D - 9 144 IPR036770 -
Dere07g0964 442 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Dere07g0964 442 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Dere07g0964 442 Pfam Ankyrin repeats (3 copies) 15 108 IPR002110 GO:0005515
Dere07g0964 442 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Dere07g0964 442 SUPERFAMILY RING/U-box 314 375 - -
Dere07g0964 442 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Dere07g0964 442 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Dere07g0964 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 388 IPR013083 -
Dere07g0964 442 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0964 Dere-ChrDere07 13177053 13179798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0964 50 247 Miscellaneous Gene Families AT5G02620 29.612 1.08e-07 52.4