Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0962 ATGGAGGAAGATAAAGCCGCTATAGCACAGAGCTCGATTGACTTGGTGAACGAAATAGCAGCGATCTCGGACTACAGGAGCACGGTCAAGAAGCAGTACTGCAATCTAGCGAGAAGGTTGAAGCTGTTGACTCCAATGTTTGAAGAGATTAGGGACAGCAAAGAGACGTTCCCTGAAGAGACTTTGAAAGCTTTGATTTCCTTCAAAGAAGCTTTGGAATCGGCCAAGCAACTTCTCAGATTCGGGAGCGAAGGGAGCAAGATTTACATGGTCTTAGAGAGGGACCAAATTATGAATAAATACCATGAGGTGACAGCTCAATTAGAACAAGCTTTGAGTGGGATTTCATATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTAGCCCAATTCAGAAGAGCCAAAGGAAGAGTTGATGCACCTGATGACGAGTTGCACGAGGATCTCTTATTACTTTACGATAAGAGCTGTGATGCAGCTACGGATCCAGCTGTTCTGAGGAGATTAGCTGAAAAACTGCAATTGCTGGGAATATCTGATCTTACTCAAGAATCACTAGCATTGCATGAGATGGTGGCAGCAAGTGGTGGGGATCCAGGGGCAAGCATTGAGAAAATGTCAATGTTATTGAAAAAAATAAAGGATTACGTGCAAACAGAGAATCTTTACATGGATGAAAAGGAAGGAGGAAAAGGCATTTCTTCAAGCAGCAGCAGTCGAGGGATGAGTGAAAAGGGTCATCAGGCCCCTGTTATCCCTGATGATTTTCGATGTCCAATATCCCTGGAATTAATGAAGGATCCTGTAATTGTTTCAACGGGACAGACTTATGAGCGTTCTTGTATTGAGAAATGGTTGGAAGCAGGGCATGGAACCTGTCCGAAAACACAGCAGACACTTACTAGTACTGTTCTTACACCCAATTATGTCTTACGAAGCCTCATAGCACAGTGGTGTGAAGCCAATGGCATAGAACCTCCAAAACGACCCAGCAGTTCCCGGCCTAGTAAGTTAGCATCTGCCTGCTCACCAGCTGAGCGTAGTAAGATTGAAAATCTTCTCCGCAAGCTTACATCTGGTAATCCTGAAGACCAGAGATCAGCTGCAGGTGAGGTCCGCCTTCTTGCAAAGCGCAATGCAGATAACCGTGTGGCCATTGCAGAAGCTGGTGCAATACCACTCCTTGTTGGCCTCCTCTCTACACCTGACTCCCGAACTCAAGAGCATGCTGTCACGGCACTTTTAAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCTGGTATAGTGCATGTGCTCAAGAAGGGCAGCATGGAAGCTCGAGAAAATGCAGCAGCCACACTTTTCAGCCTTTCAGTCATAGATGAAAATAAGATTACTATTGGATCATCAGGAGCCATCCCACCACTAGTGACACTGCTGAGCGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATATACCAGGGTAACAAGGGAAAGGCAGTGAGGGCAGGTGTTGTTCCTACACTGATGCGACTGCTAACGGAACCTGGCGCGGGAATGGTTGATGAAGCATTGGCTATATTGGCAATATTGGCTAGCCATCCAGATGGGAAGGCTGCAATTGGTGCTGCAGAGGCCGTGCCAGTTTTGGTAGAGGTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCAGCTGCTGTTTTAGTACACCTTTGTTCTGGAGATCAGCAATATTTAGCACAGGCTCAAGATCTCGGGTTGATGGGTCCATTGCTGGATCTGGCTCAAAATGGTACTGACAGAGGCAAAAGAAAGGCTGCACAATTGCTAGAGCGAATGAGCAGGTTCCTTGAGCAGCAGCAAGAAGCTCAAACACTGTCCGAAGTTCAAGCTCAGAATCATGATATAGGGCCGCCTTCTATTACTAACCTTGTTGATAGATGA 1992 0.4578 MEEDKAAIAQSSIDLVNEIAAISDYRSTVKKQYCNLARRLKLLTPMFEEIRDSKETFPEETLKALISFKEALESAKQLLRFGSEGSKIYMVLERDQIMNKYHEVTAQLEQALSGISYDKLDISDEVKEQVELVLAQFRRAKGRVDAPDDELHEDLLLLYDKSCDAATDPAVLRRLAEKLQLLGISDLTQESLALHEMVAASGGDPGASIEKMSMLLKKIKDYVQTENLYMDEKEGGKGISSSSSSRGMSEKGHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSSSRPSKLASACSPAERSKIENLLRKLTSGNPEDQRSAAGEVRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKITIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGAGMVDEALAILAILASHPDGKAAIGAAEAVPVLVEVIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQDLGLMGPLLDLAQNGTDRGKRKAAQLLERMSRFLEQQQEAQTLSEVQAQNHDIGPPSITNLVDR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0962 663 MobiDBLite consensus disorder prediction 233 256 - -
Dere07g0962 663 SUPERFAMILY ARM repeat 356 637 IPR016024 -
Dere07g0962 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Dere07g0962 663 MobiDBLite consensus disorder prediction 644 663 - -
Dere07g0962 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Dere07g0962 663 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Dere07g0962 663 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Dere07g0962 663 SMART arm_5 426 466 IPR000225 GO:0005515
Dere07g0962 663 SMART arm_5 549 589 IPR000225 GO:0005515
Dere07g0962 663 SMART arm_5 385 425 IPR000225 GO:0005515
Dere07g0962 663 SMART arm_5 508 548 IPR000225 GO:0005515
Dere07g0962 663 SMART arm_5 591 631 IPR000225 GO:0005515
Dere07g0962 663 SMART arm_5 467 507 IPR000225 GO:0005515
Dere07g0962 663 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Dere07g0962 663 FunFam RING-type E3 ubiquitin transferase 532 650 - -
Dere07g0962 663 PANTHER U BOX DOMAIN-CONTAINING 28 631 - -
Dere07g0962 663 CDD MLKL_NTD 13 138 - -
Dere07g0962 663 CDD RING-Ubox_PUB 259 311 IPR045210 -
Dere07g0962 663 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Dere07g0962 663 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Dere07g0962 663 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Dere07g0962 663 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Dere07g0962 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Dere07g0962 663 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Dere07g0962 663 SUPERFAMILY RING/U-box 256 334 - -
Dere07g0962 663 Gene3D - 342 656 IPR011989 -
Dere07g0962 663 Pfam Neurochondrin 520 639 IPR008709 -
Dere07g0962 663 Gene3D - 7 118 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0962 Dere-ChrDere07 13153698 13158049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0962 1 662 U-box Gene Family AT3G46510 72.054 0.0 962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0962 07 13153698 13158049 Dere07g0962 07 13153698 13158049 ECH