Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0961 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAGCAACAAAACCATTACCAATCAAATGGAACTGAAAGCCCTCAGCTGCTTCAGCATGCGGGAGGTGGCGCTGCAAGCTCAATCCGGCCCGGTTCGATGGCCGATCGGGCCCGGCTTGCGAAGCTACCACCTCCGGAGGCAGCCCTAAAGTGTCCCCGTTGCGAATCCACCAACACAAAATTTTGCTACTTCAACAATTACAGCCTGACTCAACCACGTCACTTCTGCAAGACATGTCGTCGCTACTGGACAAGAGGCGGCGCTCTCAGAAACGTTCCGGTGGGCGGCGGATGCCGAAGAAACAAGAAGAGCAAAAGGAGCCGCTCAAAATCTCCGGCAGCACCCACCACTGCTGACAACAAACAGACCCCTCTTGCCAGCGCAGCCCCAAGTGCAATCCCCTCCGGCGCCACCACCTCCGAGCTGATAGGTCAGTTACAGCAACCTTCCAACTTACCTTTCATGGCTTCTTTACAGAACCTGGGCCGGTACGGCGTAGGAAACATGGGCCTGAGCTTGCGAGAGATCTTCGCCCAGACTGAGCCCATGGGCTTTCAAATCGGGGGAATGGATAGCCAGTGGCGCTCACAGCAATTCCCTAATTTCTTGAATGGGTTTGAGTCAAATTCAGCTGGTTCTTCTTACCAATTTCAAAGTGAAAGTGTGGAAGGAGTAGTACAAACTGGTGTGCTTGGAGATACAAGTTCTAGGGTTACGACTCAGCTGCCACCTGTTAAATTGGAAGAAAATGGAGCCCTAAATTCGTCGAGATCTCCTCTCGGTAATACTAACAACAACAATAATCAGTACTATTCGTGGACTGATTTTTCGGGTCTTGCATCTTCTTCCACTAGCCACCTTTTGTAA 915 0.5082 MVFSSIPVYLDPPNWQQQQNHYQSNGTESPQLLQHAGGGAASSIRPGSMADRARLAKLPPPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKRSRSKSPAAPTTADNKQTPLASAAPSAIPSGATTSELIGQLQQPSNLPFMASLQNLGRYGVGNMGLSLREIFAQTEPMGFQIGGMDSQWRSQQFPNFLNGFESNSAGSSYQFQSESVEGVVQTGVLGDTSSRVTTQLPPVKLEENGALNSSRSPLGNTNNNNNQYYSWTDFSGLASSSTSHLL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0961 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 232 IPR045174 GO:0003700|GO:0006355
Dere07g0961 304 MobiDBLite consensus disorder prediction 251 280 - -
Dere07g0961 304 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677|GO:0006355
Dere07g0961 304 MobiDBLite consensus disorder prediction 126 152 - -
Dere07g0961 304 MobiDBLite consensus disorder prediction 14 32 - -
Dere07g0961 304 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677|GO:0006355
Dere07g0961 304 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677|GO:0006355
Dere07g0961 304 MobiDBLite consensus disorder prediction 14 46 - -
Dere07g0961 304 MobiDBLite consensus disorder prediction 109 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0961 Dere-ChrDere07 13147772 13148878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0961 29 303 C2C2-Dof Transcription Factor Family AT3G55370 45.667 6.87e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere07g0961 zf-Dof 2.1e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1198 08 16114131 16115173 Dere07g0961 07 13147772 13148878 CCT