Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0945 ATGTCGGCAGCTCTGGATATGACTCTTGATGATATCATCAAGAACAACAAGAAGTCTGGATCCGGTAACTCCAGAGGTCGTGGTCGAGGATCCGGTCCCGGTCCCGCTCGCCGCTTTCCCAACCGCGCCGCCAATCGTGTCGCACCTTATACCCCTGCGAAGGCACCGGATGCGACATGGCAGCATGATATGTTCGCGGATCAGCCTGCGGCACCGTTCGCAGCTCCAGGTGGTCGAGCTTCTTCCATAGAAACGGGGACCAAGCTCTACATATCTAATTTGGATTACGGTGTTTCGAACGAGGATATTAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGATATACAATTCATTATGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTCTTTTCACGACGAGCTGATGCTGTAGCTGCAGTAAAGAGATACAACAATGTTCAACTTGATGGAAAACCCATGAAGATAGAGATTGTGGGGACAAACATTACTACGCCTTCTGTGGCTCCTGCAGTAAATGGAGCTGTTGGAAACTCAAATGGAGCTCCTAGAATTGGGCAAGGGAGAGGTGGGGCATTCGGACGGCCACGTGGTGGAGGTAGGGGGCGTGGCTTCCAGAGGGGCCGTGGACGTGGAAGAGGTCGTGGAGAAAAGGTTTCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATTCAGAGGCAATGCAGTTAAACTGA 729 0.5048 MSAALDMTLDDIIKNNKKSGSGNSRGRGRGSGPGPARRFPNRAANRVAPYTPAKAPDATWQHDMFADQPAAPFAAPGGRASSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYTIHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNITTPSVAPAVNGAVGNSNGAPRIGQGRGGAFGRPRGGGRGRGFQRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQLN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0945 242 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 240 - -
Dere07g0945 242 SMART FoP_duplication_2 170 242 IPR025715 -
Dere07g0945 242 SMART rrm1_1 88 160 IPR000504 GO:0003723
Dere07g0945 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Dere07g0945 242 MobiDBLite consensus disorder prediction 1 54 - -
Dere07g0945 242 FunFam THO complex subunit 4 80 224 - -
Dere07g0945 242 CDD RRM_THOC4 87 161 - -
Dere07g0945 242 Pfam C-terminal duplication domain of Friend of PRMT1 186 237 IPR025715 -
Dere07g0945 242 SUPERFAMILY RNA-binding domain, RBD 22 161 IPR035979 GO:0003676
Dere07g0945 242 Gene3D - 76 224 IPR012677 -
Dere07g0945 242 MobiDBLite consensus disorder prediction 213 235 - -
Dere07g0945 242 MobiDBLite consensus disorder prediction 182 242 - -
Dere07g0945 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0945 Dere-ChrDere07 13025782 13028978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0945 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 1.92e-09 55.5