Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0937 ATGAAGAAGAGAGGCAGAGAAGAGGGCGAAGTAGAGAGCTTAGACATGGCCAAGTGTTTGATGTTATTATCCAAAGTAGGCGAAATGAAGGCAAATACCAGAGAGAGTGGTGGCTTCAAGTGCAGGACTTGCAGTAGGGAGTTTTCTTCATTTCAGGCGCTTGGAGGGCACAGAGCGAGCCACAACAAGAAGCCGAAGCTGATGACGATGAAGCCGAAGATGCATGGGTGCCATATTTGTGGGGTTGAGTTCGAGATCGGACAAGCCCTAGGAGGACACATGAGGAAGCACAGAGCTGAAGCCGTTAGCAATGGCTTGGGCAAATCCGATAGGGAAGGGATTGATTTGCTGTCGTTGGACTTGAACTTGACGCCTTTGGAGAATGGTTTGAAGCTTGAGTTAAGGCCACACTTGGTGAATTGTCCTTTTTGA 432 0.4861 MKKRGREEGEVESLDMAKCLMLLSKVGEMKANTRESGGFKCRTCSREFSSFQALGGHRASHNKKPKLMTMKPKMHGCHICGVEFEIGQALGGHMRKHRAEAVSNGLGKSDREGIDLLSLDLNLTPLENGLKLELRPHLVNCPF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0937 143 SUPERFAMILY beta-beta-alpha zinc fingers 39 97 IPR036236 -
Dere07g0937 143 SMART c2h2final6 75 97 IPR013087 -
Dere07g0937 143 SMART c2h2final6 39 61 IPR013087 -
Dere07g0937 143 PANTHER ZINC FINGER PROTEIN ZAT5 8 127 - -
Dere07g0937 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Dere07g0937 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Dere07g0937 143 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Dere07g0937 143 Gene3D Classic Zinc Finger 21 104 - -
Dere07g0937 143 Pfam C2H2-type zinc finger 39 63 - -
Dere07g0937 143 Pfam C2H2-type zinc finger 75 100 - -
Dere07g0937 143 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0937 Dere-ChrDere07 12985827 12986258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0937 3 134 C2H2 Transcription Factor Family AT2G28710 47.403 1.60e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere07g0937 zf-C2H2_6 3e-09 CL0361