Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere07g0930 | ATGTGCTGTAGAGCTAACCGCACTAGTACCCCTAGAAACCATGCTTCAAGGGGAAATCTGGATGAGTCCAATCCTGATCATCATCATTCTTTTCAGTTTCAAGGCCCTGGTTTAGAGCTGTGTGACATATCCTCTCTTCCCATGTCTCAGTTTAAGAAGAAAGTGGGAGAAGGAGAAGAGAAGCCAGTCAACACAGAGTGTGCAATTTGCTTGGGTGAGTTTGAAGAAGAAGAATGGGTTAAAGAACTCTCTAATTGCACCCATCTCTTCCATTCCAAGGGGGGAAGGCTTTGCACAAGAAAGGGCTTCACATTTCCAGGCCTCAACTCTGAAATATTCTGTGTCACCTTCGTCGTAGTAAGTTTCTACTATATGTTTAAGCCCATATTCTGTGGAATTAACCGCACTGGTACCCCTAGAAGCCGTGCTTCAAGGGGAAATATGGATGAGTCCAATGCTTATCATCATCATTCTTCACAGTTTCAAGGCCGTGGATTAGAGTCGTCTGACATATCCTCTCTTCCTATGTTTCAGTTTAAGAATACTGAGGAAGAAGGAGAAGAGAAGCGAACCAACACAGAGTGTGCAATTTGCTTGGGTGAGTTTGAAGAAGAAGAATGGGTTAAAGAACTCCCCTATTGCACCCACGTTTTCCATGTTTCCTGCATAGACACGTGGTGTAAGTCTCACTCAAATTGCCCTCTCTGCAGATCTAAAGTCCAACATAATAATCTCACTCTCGACCTTGAGTCTCAATATCTTCCGACACATAGCTAG | 777 | 0.4376 | MCCRANRTSTPRNHASRGNLDESNPDHHHSFQFQGPGLELCDISSLPMSQFKKKVGEGEEKPVNTECAICLGEFEEEEWVKELSNCTHLFHSKGGRLCTRKGFTFPGLNSEIFCVTFVVVSFYYMFKPIFCGINRTGTPRSRASRGNMDESNAYHHHSSQFQGRGLESSDISSLPMFQFKNTEEEGEEKRTNTECAICLGEFEEEEWVKELPYCTHVFHVSCIDTWCKSHSNCPLCRSKVQHNNLTLDLESQYLPTHS | 258 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere07g0930 | 258 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Dere07g0930 | 258 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 2 | 92 | IPR044600 | GO:0016567|GO:0016740 | |
Dere07g0930 | 258 | SMART | ring_2 | 67 | 114 | IPR001841 | - | |
Dere07g0930 | 258 | SMART | ring_2 | 195 | 236 | IPR001841 | - | |
Dere07g0930 | 258 | FunFam | E3 ubiquitin-protein ligase ATL6 | 154 | 243 | - | - | |
Dere07g0930 | 258 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 104 | IPR013083 | - | |
Dere07g0930 | 258 | ProSiteProfiles | Zinc finger RING-type profile. | 195 | 237 | IPR001841 | - | |
Dere07g0930 | 258 | SUPERFAMILY | RING/U-box | 58 | 92 | - | - | |
Dere07g0930 | 258 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 243 | IPR013083 | - | |
Dere07g0930 | 258 | MobiDBLite | consensus disorder prediction | 138 | 167 | - | - | |
Dere07g0930 | 258 | Pfam | Ring finger domain | 194 | 237 | IPR001841 | - | |
Dere07g0930 | 258 | Pfam | RING-like zinc finger | 66 | 93 | IPR001841 | - | |
Dere07g0930 | 258 | SUPERFAMILY | RING/U-box | 179 | 242 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere07g0930 | Dere-ChrDere07 | 12908250 | 12911247 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere07g0930 | 22 | 91 | C3H Transcription Factor Family | AT1G04360 | 34.247 | 9.91e-08 | 50.4 |