Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0930 ATGTGCTGTAGAGCTAACCGCACTAGTACCCCTAGAAACCATGCTTCAAGGGGAAATCTGGATGAGTCCAATCCTGATCATCATCATTCTTTTCAGTTTCAAGGCCCTGGTTTAGAGCTGTGTGACATATCCTCTCTTCCCATGTCTCAGTTTAAGAAGAAAGTGGGAGAAGGAGAAGAGAAGCCAGTCAACACAGAGTGTGCAATTTGCTTGGGTGAGTTTGAAGAAGAAGAATGGGTTAAAGAACTCTCTAATTGCACCCATCTCTTCCATTCCAAGGGGGGAAGGCTTTGCACAAGAAAGGGCTTCACATTTCCAGGCCTCAACTCTGAAATATTCTGTGTCACCTTCGTCGTAGTAAGTTTCTACTATATGTTTAAGCCCATATTCTGTGGAATTAACCGCACTGGTACCCCTAGAAGCCGTGCTTCAAGGGGAAATATGGATGAGTCCAATGCTTATCATCATCATTCTTCACAGTTTCAAGGCCGTGGATTAGAGTCGTCTGACATATCCTCTCTTCCTATGTTTCAGTTTAAGAATACTGAGGAAGAAGGAGAAGAGAAGCGAACCAACACAGAGTGTGCAATTTGCTTGGGTGAGTTTGAAGAAGAAGAATGGGTTAAAGAACTCCCCTATTGCACCCACGTTTTCCATGTTTCCTGCATAGACACGTGGTGTAAGTCTCACTCAAATTGCCCTCTCTGCAGATCTAAAGTCCAACATAATAATCTCACTCTCGACCTTGAGTCTCAATATCTTCCGACACATAGCTAG 777 0.4376 MCCRANRTSTPRNHASRGNLDESNPDHHHSFQFQGPGLELCDISSLPMSQFKKKVGEGEEKPVNTECAICLGEFEEEEWVKELSNCTHLFHSKGGRLCTRKGFTFPGLNSEIFCVTFVVVSFYYMFKPIFCGINRTGTPRSRASRGNMDESNAYHHHSSQFQGRGLESSDISSLPMFQFKNTEEEGEEKRTNTECAICLGEFEEEEWVKELPYCTHVFHVSCIDTWCKSHSNCPLCRSKVQHNNLTLDLESQYLPTHS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0930 258 MobiDBLite consensus disorder prediction 1 26 - -
Dere07g0930 258 PANTHER RING-H2 FINGER PROTEIN ATL16 2 92 IPR044600 GO:0016567|GO:0016740
Dere07g0930 258 SMART ring_2 67 114 IPR001841 -
Dere07g0930 258 SMART ring_2 195 236 IPR001841 -
Dere07g0930 258 FunFam E3 ubiquitin-protein ligase ATL6 154 243 - -
Dere07g0930 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 104 IPR013083 -
Dere07g0930 258 ProSiteProfiles Zinc finger RING-type profile. 195 237 IPR001841 -
Dere07g0930 258 SUPERFAMILY RING/U-box 58 92 - -
Dere07g0930 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 243 IPR013083 -
Dere07g0930 258 MobiDBLite consensus disorder prediction 138 167 - -
Dere07g0930 258 Pfam Ring finger domain 194 237 IPR001841 -
Dere07g0930 258 Pfam RING-like zinc finger 66 93 IPR001841 -
Dere07g0930 258 SUPERFAMILY RING/U-box 179 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0930 Dere-ChrDere07 12908250 12911247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0930 22 91 C3H Transcription Factor Family AT1G04360 34.247 9.91e-08 50.4