Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0925 ATGCGTCGACGACAGAGCTTGCACAAGTGGAAACGACGTTCCCGGAAATGCTGCCACGTGATTCTGCGAGATCATCTCATCGTGTATAAATGCACACTGCACTCGCGGGGGTTTCACGCAGTGCGTAGAGAATTAGTGACAGAGAAGGGTGCTGTGATCCTTGATTTTCTCTGTGAGTATTTTTGGTTTTCGGTAATCGAGAGAGGAAGGAGAAAGGAGAAAATGGAGATCGATCTTACTCCCCAGTTGGCCAAGAAGGTGTGCGGTGACAATGGTGGGTCCTACTACGCCTGGTCACCCTCTGAGCTTCCCATGTTACGCCATGGAAACATCGGTGCGGCCAAGCTCGCTCTTGAGAAGAATGGTTTCGCGGTTCCTTGCTACTCCGACTCTTCCGCCGTTGCCTATGTTCTCCAAGGAAAGGGCGTTGTTGGAGTTGTGCTCCCTGAATCAGAAGAGAAGGTTCTTGCAATTAAGAAGGGTGATGCGATAGCACTCCCTTTTGGTGTTGTGACATGGTGGTACAATAAGGATGATACTGAGCTGGTTGTTCTTTTCCTGGGTGACACTTCTAAAGCTCACAAGGCTGGTGAATTCACCAATTTCTACCTGACCGGTGCTAATGGAATCTTCACTGGTTTTTCTACTGAGTTTGTGGGCAGAGCATGGGACTTGGAAGAGAAGGATGTTAAGACCCTTGTTGGAAACCAATCGGGCAAGGGCATTGTTAAACTTGATGGGAATATCAACCTTCCTGAGCCCAAGCCAGATCATCGCAAGGGTATGGCATTGAATTGTGAAGAGGCTCCATTGGATGTTGACATTAAGAACGGTGGAAGAGTCGTGGTTTTGAACACCAAGAATCTTCCATTGGTTGGTGAGGTTGGACTTGGAGCAGATCTTGTTAGGTTGGATGGAAGTGCCATGTGCTCTCCTGGATTTTCTTGTGACTCTGCTTTACAAGTTACTTATATTGTCAGAGGAAGTGGCCGAGTTCAGGTTGTTGGTCCCAATGGCCAGAGAGTCTTAGACACAACAATAAAAGCTGGTAATCTGTTCATTGTACCAAGGTTTTTTGTGGTTTCAAAGATTGCTGATCCTGATGGAATGGAATGGTTCTCTATCATCACCACCCCTAATCCTGTTTTTACCCATTTGGCTGGAAGTTCTTCAGTGTGGAAGGCTCTATCTCCGACTGTTCTACAGGCTGCTTTCAATGTGGATTCAGGAGTTGAACAACTCTTCCGTTCAAAGAGGACTGCTGATGCCATTTTCTTCCCTCCACCAAAGTAG 1293 0.471 MRRRQSLHKWKRRSRKCCHVILRDHLIVYKCTLHSRGFHAVRRELVTEKGAVILDFLCEYFWFSVIERGRRKEKMEIDLTPQLAKKVCGDNGGSYYAWSPSELPMLRHGNIGAAKLALEKNGFAVPCYSDSSAVAYVLQGKGVVGVVLPESEEKVLAIKKGDAIALPFGVVTWWYNKDDTELVVLFLGDTSKAHKAGEFTNFYLTGANGIFTGFSTEFVGRAWDLEEKDVKTLVGNQSGKGIVKLDGNINLPEPKPDHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQVTYIVRGSGRVQVVGPNGQRVLDTTIKAGNLFIVPRFFVVSKIADPDGMEWFSIITTPNPVFTHLAGSSSVWKALSPTVLQAAFNVDSGVEQLFRSKRTADAIFFPPPK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0925 430 SUPERFAMILY RmlC-like cupins 90 419 IPR011051 -
Dere07g0925 430 CDD cupin_11S_legumin_N 77 247 - -
Dere07g0925 430 PRINTS 11-S seed storage protein family signature 285 305 IPR006044 GO:0045735
Dere07g0925 430 PRINTS 11-S seed storage protein family signature 332 348 IPR006044 GO:0045735
Dere07g0925 430 PRINTS 11-S seed storage protein family signature 390 407 IPR006044 GO:0045735
Dere07g0925 430 PRINTS 11-S seed storage protein family signature 350 365 IPR006044 GO:0045735
Dere07g0925 430 PRINTS 11-S seed storage protein family signature 368 386 IPR006044 GO:0045735
Dere07g0925 430 Gene3D Jelly Rolls 68 268 IPR014710 -
Dere07g0925 430 SMART Cupin_1_3 77 231 IPR006045 -
Dere07g0925 430 SMART Cupin_1_3 269 413 IPR006045 -
Dere07g0925 430 CDD cupin_11S_legumin_C 272 427 - -
Dere07g0925 430 FunFam Glycinin G1 266 430 - -
Dere07g0925 430 Pfam Cupin 273 409 IPR006045 -
Dere07g0925 430 Pfam Cupin 89 230 IPR006045 -
Dere07g0925 430 Gene3D Jelly Rolls 269 430 IPR014710 -
Dere07g0925 430 PANTHER OS03G0336100 PROTEIN-RELATED 72 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0925 Dere-ChrDere07 12876803 12879952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0925 109 409 Miscellaneous Gene Families AT2G18540 22.881 8.62e-10 58.9