Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0922 ATGCAGGCTGTCAATGTTCTTCCTGCTTCCGCCCGGAAGATACTTTCAAGATCAAAAGCTATTTATCTGATACAACCAACTCCTTTGCCCCGATACTCCAACCAAAACCTGCCTCAACTATTTTGTGCTCTCCATACCAACAATTTTGGAGCCAAATCCCGCCATGAACGACATCAAATCTCTACTTCAAAGCGTCGCAAGTGCATACCTTTCATCGCCCAAGTCAAAGAAGAGCATGATCCAGAAGAAGCCTTATCTCTCTTTGAAGAGTACAAGAAACAGGGATTCAGGCACGATTATCCCTCCTATGCTGCATTACTGTACAAACTGGCTCGATCTAGAAGCTTTGAAGCTGTTGAATCTGTTCTTACTCATATTCAAGACAGAGGCATACACTGCAAAGAAATCATTTTTGTTGCTTTGTTTCAGCATTACAGTGAAGCCAAACTTCCTGAAAAGGTTGTCGAACTTTTTCATAGAATGCCTCAATTCAATTGCGTCCGTTCATTGCAGTCCTTCAATGCTCTTCTTAATGCTTTAATCAACAATGATCGGTTTAACGAAGCAAATGATACTTTCGGAGAATCATATGAAATGGGATTTCGCCCAAACACAGTTTCGTTCAATATAATGATCAAGGGATGGTTGGCAAAGGATGAGTTTGATAATGCATGTGACGTGTTCGATGAAATGCTGGAGAAGAAAGTACGGCCAAGTGTTGTGACATATAATAGTCTCATTGGGTTCTTGTCTAGAAAGGGTGATTTAAAAAAAGCAATGTCGTTGCTTGAGGATATGACCCAGAAAGGAATATACCCAAATGAAGTAACTTATGCGTTGTTGATGGAGGGCCTTTGCTCGGTGGACAAGTTCGAGGAAGCTAAGAAGCTTATGTTTGATATGGCATATCGAGGGTGCAAACCTCGGCTAGTCAATTTTGCTGTTTTGATGAATGATCTGGGAAAGAGAAGGAAGATTGAGGAGGCAAAATCTTTACTTCACGAGATGAGAAAAAGGCATTTGAAGCCAGATGTTGTAATCTACAATACATTAATAAATTATCTATGCAAGGAAGGTAAGACAGGTGAAGCATACAAAGTCTTAATTGAGATGCAGATTAAGGGTTGTGAGCCAAATGCCGCTACATACAGGATGATAGTCGATGGTTTCTGCAAGATTGGGGATTTTGAGGTAGGTCTGAATGTTTTGAATGCAATGCTAGCAAGCAAACATTATCCACGTTCAGAAACATTTGACTCTTTGTTTGTCGGCCTATTAAATAGTGGGAAAATTGATGGTGGTTGCTTTGTCTTGGAAGAGATGGAGAAGAGAAAAGTACAACTTGATTTGAAGAGCTGGGAAACAATTGTGAAGTATGCTTGTGGTGAGGATAAAAATGCATGTCAGCTTATTGATGACCTTACATCCACTAATCAACTACATTAG 1446 0.4011 MQAVNVLPASARKILSRSKAIYLIQPTPLPRYSNQNLPQLFCALHTNNFGAKSRHERHQISTSKRRKCIPFIAQVKEEHDPEEALSLFEEYKKQGFRHDYPSYAALLYKLARSRSFEAVESVLTHIQDRGIHCKEIIFVALFQHYSEAKLPEKVVELFHRMPQFNCVRSLQSFNALLNALINNDRFNEANDTFGESYEMGFRPNTVSFNIMIKGWLAKDEFDNACDVFDEMLEKKVRPSVVTYNSLIGFLSRKGDLKKAMSLLEDMTQKGIYPNEVTYALLMEGLCSVDKFEEAKKLMFDMAYRGCKPRLVNFAVLMNDLGKRRKIEEAKSLLHEMRKRHLKPDVVIYNTLINYLCKEGKTGEAYKVLIEMQIKGCEPNAATYRMIVDGFCKIGDFEVGLNVLNAMLASKHYPRSETFDSLFVGLLNSGKIDGGCFVLEEMEKRKVQLDLKSWETIVKYACGEDKNACQLIDDLTSTNQLH 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0922 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Dere07g0922 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Dere07g0922 481 Pfam PPR repeat family 238 287 IPR002885 -
Dere07g0922 481 Pfam PPR repeat family 172 214 IPR002885 -
Dere07g0922 481 Pfam PPR repeat family 343 392 IPR002885 -
Dere07g0922 481 Gene3D Tetratricopeptide repeat domain 339 412 IPR011990 GO:0005515
Dere07g0922 481 Gene3D Tetratricopeptide repeat domain 196 268 IPR011990 GO:0005515
Dere07g0922 481 Gene3D Tetratricopeptide repeat domain 269 338 IPR011990 GO:0005515
Dere07g0922 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Dere07g0922 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Dere07g0922 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Dere07g0922 481 Gene3D Tetratricopeptide repeat domain 48 195 IPR011990 GO:0005515
Dere07g0922 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Dere07g0922 481 Pfam PPR repeat 138 166 IPR002885 -
Dere07g0922 481 Pfam PPR repeat 315 339 IPR002885 -
Dere07g0922 481 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 78 214 - -
Dere07g0922 481 NCBIfam pentatricopeptide repeat 206 239 IPR002885 -
Dere07g0922 481 NCBIfam pentatricopeptide repeat 276 308 IPR002885 -
Dere07g0922 481 NCBIfam pentatricopeptide repeat 172 205 IPR002885 -
Dere07g0922 481 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
Dere07g0922 481 NCBIfam pentatricopeptide repeat 346 380 IPR002885 -
Dere07g0922 481 NCBIfam pentatricopeptide repeat 382 413 IPR002885 -
Dere07g0922 481 NCBIfam pentatricopeptide repeat 314 345 IPR002885 -
Dere07g0922 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0922 Dere-ChrDere07 12802641 12804086 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0922 107 480 Glycosyltransferase AT1G05670 25.635 1.52e-30 123