Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0875 ATGGAGTGCAGTGACCCAAACACTCCCAGTCCTACTTCCTCCGTCCCTCTCTCTCACTCTCCTTCTTCCTCATCCTCCCCTCCAATAACCCCACAAGTCGTTGCAAGTCCTTGTGCTGCTTGTAAGATCTTAAGGCGTAGATGTGCTGAGAAATGTGTTCTCGCTCCTTATTTCCCTCCCACTGAACCTGCAAAATTCACCATTGCTCACAGAGTCTTCGGAGCCAGCAACATCATTAAGTTCTTGCAGGAACTTCCAGAGTCGCAAAGAGCTGATGCAGTGAGTAGTATGGTGTACGAGGCAAGTGCGAGAATAAGAGACCCAGTGTATGGATGTGCAGGTGCGATTTGCCAGCTACAGAAGCAAGTTAACGAGCTTCAAGCTCAACTGGCCAAAGCACAAGCCGAGCTTGTGAACATGCAATTCCAGCAAGCCAATCTCGTGGCTCTATTCTGCATGGAAATGGCTCAAACCCAAACCAGTACTACTCCACAGGACTATTCTTCACCACAAGCATCCATGGAACAAGACACTAATTTCATTGCCTCAAGCCACCTCAGCTTCTTCGAGGAAAATGCTAGCCTTAACTCATTCTGGGAGCAGCCACTTTGGACATGA 618 0.4854 MECSDPNTPSPTSSVPLSHSPSSSSSPPITPQVVASPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAELVNMQFQQANLVALFCMEMAQTQTSTTPQDYSSPQASMEQDTNFIASSHLSFFEENASLNSFWEQPLWT 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0875 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 35 171 - -
Dere07g0875 205 Pfam Lateral organ boundaries (LOB) domain 37 134 IPR004883 -
Dere07g0875 205 Coils Coil 116 143 - -
Dere07g0875 205 ProSiteProfiles LOB domain profile. 36 137 IPR004883 -
Dere07g0875 205 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0875 Dere-ChrDere07 12248152 12249649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0875 32 205 AS2 family AT1G07900 67.232 2.27e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere07g0875 LOB 1.5e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1122 08 15108223 15109576 Dere07g0875 07 12248152 12249649 CCT
Dere07g0875 07 12248152 12249649 Dere07g0875 07 12248152 12249649 ECH