Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0862 ATGATGTCTCAACAAGGCCTTTCCCTTCCTTCCACCATCAAAACCTTCACAAGTAATCTTAACTCTACCTCTAACCCTAATCATTCCAATCCTGTCAAGAAGAAAAGAAATCTCCCAGGAACACCAGATCCAGATGCACGAGTGATAGCGCTGTCGCCCAAGTCCCTGATGGCGACGAACCGTTTTGTGTGCGAAATCTGCAACAAGGGGTTCCAGAGAGACCAGAATCTGCAGCTGCACCGTCGTGGACACAACCTCCCGTGGAAGCTCCGGCAGAGAAGCGAGAAAGATGCAGGGAAGAAAGTGTATGTGTGTCCTGAAAAAAGCTGCGTCCACCATGATCCATCCAGAGCCCTGGGAGACCTGACGGGGATAAAGAAACACTATAGCAGAAAACACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCCGTTCACTCCGATTGGAAGGCACACACCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGCGGCACACTTTTCTCCAGGAAGGACAGCTTCGTAACGCATAGAGCTTTCTGCGATGCCTTGGCGGAAGAAAGTGCCAGAATAAGCTTAATCCCTCAAGCACCGAGAGTCCCTCAGATTTTCACTGAAAATATTCATCCAGAATTTGGTGGTTCATCAGAAAGATTGGAGAATTTGATCCAGGTCAATTCGAGCGTGCCTGATTTGGTGCAAACGATGAACATGTTAGTGTCTGGGACATCATCGTCGTGGGTGAACCCATACCCAGAAGCATCATTTGCAAGTGTTGCCAATCTGGCGATGTCTGGGGTGCCACGTGGACTGAAGGAGGAGGAGGAGGAAGAAGAGAACAAGGGACAGTTGTCGTACAGCGTGAGTTCTCTGTACAGTTTTAATCATCAAAACCCACCAGGAAGCTTGGCTCAGCCCCATAACTCAGGATCTACAGGCAGCAACCATATCAACATCTTCGGGTTCATGGGCTCCTCGCTTCTCTCCAATACCACGCCGTTTAGATTTGTCGATCAGGTTGGTGTTGGACAATACTTCAAAGAAGCAGGAAATCAAACTGATAAAAACTTCAACAACTTGGTGAATTCACAAGCAGGCGCCAATCTTGGAGTTGGAGGGGATGAAGATCATGTTCTCATGTTAAATGATTCAAACTGGAGCTCGTTCGTGAGCACCACGAAGAATCTAGGTCAAATGGAAATGGGAGGTTTAACCAGAGATTTTCTGGGTATAGGTGAAAAAGAGTTAGGCAAATTTAACGCAGTAGGCTCAAGCGCTCAGCCATGGAGCTGA 1308 0.4771 MMSQQGLSLPSTIKTFTSNLNSTSNPNHSNPVKKKRNLPGTPDPDARVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSEKDAGKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVHSDWKAHTKICGTREYKCDCGTLFSRKDSFVTHRAFCDALAEESARISLIPQAPRVPQIFTENIHPEFGGSSERLENLIQVNSSVPDLVQTMNMLVSGTSSSWVNPYPEASFASVANLAMSGVPRGLKEEEEEEENKGQLSYSVSSLYSFNHQNPPGSLAQPHNSGSTGSNHINIFGFMGSSLLSNTTPFRFVDQVGVGQYFKEAGNQTDKNFNNLVNSQAGANLGVGGDEDHVLMLNDSNWSSFVSTTKNLGQMEMGGLTRDFLGIGEKELGKFNAVGSSAQPWS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0862 435 MobiDBLite consensus disorder prediction 15 45 - -
Dere07g0862 435 SMART c2h2final6 62 84 IPR013087 -
Dere07g0862 435 SMART c2h2final6 138 158 IPR013087 -
Dere07g0862 435 SMART c2h2final6 103 133 IPR013087 -
Dere07g0862 435 MobiDBLite consensus disorder prediction 15 34 - -
Dere07g0862 435 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 417 IPR031140 -
Dere07g0862 435 FunFam protein indeterminate-domain 12-like 41 109 - -
Dere07g0862 435 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Dere07g0862 435 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Dere07g0862 435 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Dere07g0862 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Dere07g0862 435 Gene3D Classic Zinc Finger 58 85 - -
Dere07g0862 435 Gene3D Classic Zinc Finger 95 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0862 Dere-ChrDere07 12098152 12099749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0862 25 210 IDZ Gene Family AT3G50700 79.570 8.19e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere07g0862 None None None