Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0840 ATGGCGGAAAATGTTGACTGTGAACTTTCACTTTCTTGCTCTAAAACCCTAAACCATTCTGATCCAATAAGCGGCTCTCATTCGCCCCAAGCCGCCGCGGATGACACTCAAAGCCATCAGGAAAGTTCGACTCCGAGTGGTCAACCTTCCGACGATGTCGTTTCAGGCGAGAAACGGAAGAGGGAGGACTCAGAGTCAGGGGACGCAGATCCTTCTCTCAATCCGTTGTGGAAGACCAGCCTCTGTTCTTTCTTCCGGCGACAAGATGGCTCCTGTAGCCATGGCAGTGCGTGCCGCTACGCTCACGGCGAAGAGGAGCTTCGCCCTCGCCCCGATAACACCTGGGACCCAACGTCTGAGCGGGCAAAGAAAGCGATGAAATCTGATACGGGCGAGAAATGCACTGTTACCATGGGTATCATGATGACTGAGGTTGTAGTTGATGATGCTGATACCGAGGACAACGATGGTTCCAATCACGCGCTCAGCAAATGTTTGGTGCATTTACCGAGGAAGTGGGGCTCGGAGAACTTGAGGAATTTTCTCAATGAAGAGGGTATTTCTTTTAAATTTGCGAAGAAAAAGAAAGGTATGTTGGTAGGATTTGTCACTTTTGAAGATCAAGAACAATTGAAGAGCTCATCAAAGGAGCTGGAAGGTAAATCAATTGGCAGTAGAAGGTTAAAGGTTGCAGATGTCGTTCCCCGGTCATTTGAAAAGAAAAGTAACTCAAATGTCACTCTCTGCCAAGAATCTCCCCAAAACGCTGGTGCATCATTGGCTAGGGAGAATACTGGCAGCTATGTTCCCTCAAATGGCAATGTAAATGGTGAGACAAATGGTGCCAATTTGGCAGTTGATGATTCCATGTCAAAGACAAGAAGCCTCCGTGAAGTAGTGACTCCTCTGGCTCATATGGCCTATGCTGATCAGTTAGAGCACAAAAAAGGCTCTCTCATGCAGATTCTCAAAAGACTTACTAGAAATGCTCGTAAAGCTTGTCCAAGCAGCGTTTCTCTGCCCGAGTGGATTCTCAAGTCTAGGGACATAGGTGGTCTTCCCTGCAAACTAGAGGGTATTATTGGATCACCTACTGTAAATGGATATCGTAACAAGTGTGAATTTTCAGTTGGATATTCTCTAGAAGGAAAAATAACCGTAGGATTCATGCTTGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAGGCTGTGGACTGCCCAAATGTTTCTACAATTGCTCTCCAGTATGCTTCTATGTTTCAGGAATTTCTGCAGCATTCAAATTTGCCAGTTTGGAACAGATTTAAGAATAGCGGATTTTGGCGTCAATTGACAGTTCGAGAAGGGAGGAAAAATGGGAAGGTTGCTGATGCAGAAAATTTTGGTGGTATAGCAGAGGTCTTGCTTATTGTGCAGGTTTCTACTGTGGGCTTTGATGATGAACTAGTAACTGGTGAATTTGAGAAACTTGCTCAGGCTTTTGTTGAAGGAGCTACTGCTTGTTCTCCACCGTTGCCTCTCACAGCTCTGGTTGTACAGGATCACCCAGGAATATCCAATGTAGCACCAGCAGATGCCCCACTGCACTCACTTCTCACTCCCAAAGCGGTTGGTGATCAAATGGAGGAAACCAATAGTACCATGGACATGAGAATCCATGATTATATCAGCAAACTCCAGTTCTCTATATCTCCAACAGCATTTTTCCAGGTTAACACCCTAGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCGGGCTTAGGTCCTGATACATTGCTATTTGATATTTGCTGTGGGACGGGAACAATTGGCCTGACCTTAGCACATCGTGTTGGTATGGTGATTGGCATTGAAATGAATGCTTCTGCAGTATCTGATGCTCATAGGAATGCTGAGATTAATGGTGTAAAAAATTGTAGATTTATATGTGCAAAGGCAGAGGACGTGATGGGATCTCTGTTAAAGGAGTACCTAAATGTGCCAGAGGAGCAAGAAAATGTTCCTAGTATCCCTGAAACTAGAATTGACGAAGTTTCAGAGGGGAGTGTCAGTGTGTGCCACGAAACTGAAACCGGTGAAGGAGCATCTCAGTGTTCAGAAAAAGACAAGCAAGAAGATGAAAATGAGGTTCAGAAGGGTAGCACTTCTGAAAAAGGGAATACTTTGGTGCAACAATTTAAAAATGTTGTTGCTATTGTTGACCCTCCACGTGCTGGACTCCATCCAACTGTGATCAAGGCTCTAAGAACTCATCCACGTCTCCGGAGGCTTGTCTACATATCCTGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACACCATCTCCTCTGAAAATTGAAAAAGGAAACAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCCGGTCTTGCAAGACATAGGGCCAAGTCTATGCCTATCTCGGAGGCCTTCCAACCCATAAAAGCCATGGCTGTTGATCTATTCCCTCACACTGAACACTGTGAATTGGTGATGCTCCTTGAGAGGTAG 2529 0.4535 MAENVDCELSLSCSKTLNHSDPISGSHSPQAAADDTQSHQESSTPSGQPSDDVVSGEKRKREDSESGDADPSLNPLWKTSLCSFFRRQDGSCSHGSACRYAHGEEELRPRPDNTWDPTSERAKKAMKSDTGEKCTVTMGIMMTEVVVDDADTEDNDGSNHALSKCLVHLPRKWGSENLRNFLNEEGISFKFAKKKKGMLVGFVTFEDQEQLKSSSKELEGKSIGSRRLKVADVVPRSFEKKSNSNVTLCQESPQNAGASLARENTGSYVPSNGNVNGETNGANLAVDDSMSKTRSLREVVTPLAHMAYADQLEHKKGSLMQILKRLTRNARKACPSSVSLPEWILKSRDIGGLPCKLEGIIGSPTVNGYRNKCEFSVGYSLEGKITVGFMLGNFREGVTAVEEAVDCPNVSTIALQYASMFQEFLQHSNLPVWNRFKNSGFWRQLTVREGRKNGKVADAENFGGIAEVLLIVQVSTVGFDDELVTGEFEKLAQAFVEGATACSPPLPLTALVVQDHPGISNVAPADAPLHSLLTPKAVGDQMEETNSTMDMRIHDYISKLQFSISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGVKNCRFICAKAEDVMGSLLKEYLNVPEEQENVPSIPETRIDEVSEGSVSVCHETETGEGASQCSEKDKQEDENEVQKGSTSEKGNTLVQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPLKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTEHCELVMLLER 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0840 842 CDD AdoMet_MTases 598 652 - -
Dere07g0840 842 MobiDBLite consensus disorder prediction 697 716 - -
Dere07g0840 842 ProSiteProfiles Zinc finger C3H1-type profile. 76 105 IPR000571 GO:0046872
Dere07g0840 842 Gene3D - 165 234 IPR012677 -
Dere07g0840 842 Gene3D - 71 110 - -
Dere07g0840 842 Pfam tRNA (Uracil-5-)-methyltransferase 727 777 IPR010280 GO:0006396|GO:0008173
Dere07g0840 842 MobiDBLite consensus disorder prediction 53 68 - -
Dere07g0840 842 MobiDBLite consensus disorder prediction 18 51 - -
Dere07g0840 842 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 301 842 IPR029063 -
Dere07g0840 842 MobiDBLite consensus disorder prediction 691 722 - -
Dere07g0840 842 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 104 IPR000571 GO:0046872
Dere07g0840 842 ProSitePatterns RNA methyltransferase trmA family signature 1. 737 769 IPR030390 -
Dere07g0840 842 MobiDBLite consensus disorder prediction 18 73 - -
Dere07g0840 842 SUPERFAMILY RNA-binding domain, RBD 168 241 IPR035979 GO:0003676
Dere07g0840 842 Coils Coil 309 329 - -
Dere07g0840 842 SMART c3hfinal6 76 104 IPR000571 GO:0046872
Dere07g0840 842 Pfam Methyltransferase domain 596 654 IPR025714 -
Dere07g0840 842 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 299 842 IPR010280 GO:0006396|GO:0008173
Dere07g0840 842 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 94 842 IPR045850 -
Dere07g0840 842 MobiDBLite consensus disorder prediction 107 130 - -
Dere07g0840 842 SUPERFAMILY CCCH zinc finger 75 109 IPR036855 GO:0046872
Dere07g0840 842 Gene3D Vaccinia Virus protein VP39 532 841 IPR029063 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere07g0840 tRNA_U5-meth_tr 1.4e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0840 07 11896269 11902599 Dere07g0840 07 11896269 11902599 ECH