Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0839 ATGAGTACAGAGGAAAAGCTCATGAGTGAAGGACATGAAGCGGCTTCGTGCCAAAGAACAATTTCTCTTCCAGTTCAGAAGGTTGAAGATACGATGGGGATAACTGAAGAATCCACACAGACTCGTCGATGGAAGAGAGAGAATCTTTATTTAGAGATACCCTCAAGAACATCTGAACAGTCTTCTCAGGATTTTGTGACAATCAAGATTCCCCAGACTCCAAGTCCCACTCCAACTCCCAAGAGAGTGAATTTTCTCATGACTTCTCGCTCTGTTGATACTCCAATTAATAAGTCTCCAGGACCGTTGTCATCAAGAGGACGCCCAACCATAAGAAGTCTCTTACCTAAATTTAGCTTCAGGTATCGGATGTCATCAGACATTGAAAAAGCTCCTACTGCAGCTTCAGAAGGTTCCTCTTCAGGCACTCAAGAAAAGCCTTCAATCTCAAGAACATTGTCCCTTAGTAAGATATTTACTCCTAGGATTAAGAGGACGTCATCATTGCCAGTGGATGAATTTGCACAGTCAAATTCAGAATCTGCTCATGCTGGAAGTATTGGTCCTTCTCTACAGAGAAGCTCTGCCCAGAGGCAGATAGCTCGCTCTCTTTCAGTGCCTGTCAACAATAAAGAAAAAAGCTTAAGGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACCCCTCGAGTGAAGGACGGAATTGAATTGTCAACAGCATCCCCTACAAAGGATTCTGAAAACGATGTTGCTGATGGTGAAGATATAGCTGAAGAAGAGGCTGTATGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACTTTCAAGCTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGTGCTATTAAGTGGTTTAGCATAAAGGGAAACAAGATATGTGATGTGTGCAAAAAGGAGGTTCGAAACCTACCTGTCACTCTCTTACGGATCCAAAGTGTACGGGCTCGGAATACTGGAGCAAGTAGGTCTCAGCTGGAAGATGTAAATGGATACAGGGTTTGGCAGGAAGTGCCTGTTCTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAGAATGGGTACTGGTGCAATAGCCATATCTCTTCCGTTTTCATGTGTATTGGGTCTACTTTCTTCCATGACATCATCAACAATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTGTGCAATTTGCTCTGGTGGTTCTCTTCGCTCATATATTTTACTCCTTGGTAATTGCCAAAGATGTTAAGGTGCAAGCAGTTCTGTCTATTCTTCTTGCAACCTTTGCTGGGTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTTGAGCTCTTCAGATGGAGAAGAAGATGGCAGGCTTTATTGGAGCAGAATCATGGTCCTCCGGTGATGGCACGACCTGTAAATCCACCACGTTCAGGCCCTTCCACCCTCACTCAAACCACGGCACAAAATGAACAAAACTCAAGCCAGAGTTAA 1533 0.4377 MSTEEKLMSEGHEAASCQRTISLPVQKVEDTMGITEESTQTRRWKRENLYLEIPSRTSEQSSQDFVTIKIPQTPSPTPTPKRVNFLMTSRSVDTPINKSPGPLSSRGRPTIRSLLPKFSFRYRMSSDIEKAPTAASEGSSSGTQEKPSISRTLSLSKIFTPRIKRTSSLPVDEFAQSNSESAHAGSIGPSLQRSSAQRQIARSLSVPVNNKEKSLRRMDSFFRVIPSTPRVKDGIELSTASPTKDSENDVADGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKICDVCKKEVRNLPVTLLRIQSVRARNTGASRSQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSLVIAKDVKVQAVLSILLATFAGFGVVMSGSSILVELFRWRRRWQALLEQNHGPPVMARPVNPPRSGPSTLTQTTAQNEQNSSQS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0839 510 CDD RING_CH-C4HC3_MARCH 263 311 - -
Dere07g0839 510 MobiDBLite consensus disorder prediction 490 510 - -
Dere07g0839 510 SMART ringv_2 262 311 IPR011016 GO:0008270
Dere07g0839 510 MobiDBLite consensus disorder prediction 1 22 - -
Dere07g0839 510 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Dere07g0839 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 318 IPR013083 -
Dere07g0839 510 MobiDBLite consensus disorder prediction 55 72 - -
Dere07g0839 510 MobiDBLite consensus disorder prediction 55 81 - -
Dere07g0839 510 MobiDBLite consensus disorder prediction 480 510 - -
Dere07g0839 510 MobiDBLite consensus disorder prediction 132 153 - -
Dere07g0839 510 SUPERFAMILY RING/U-box 259 314 - -
Dere07g0839 510 PANTHER OS02G0165000 PROTEIN 20 477 - -
Dere07g0839 510 MobiDBLite consensus disorder prediction 129 153 - -
Dere07g0839 510 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Dere07g0839 510 MobiDBLite consensus disorder prediction 170 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0839 Dere-ChrDere07 11884539 11890109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0839 256 366 C3H Transcription Factor Family AT5G05830 35.246 7.31e-13 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1087 08 14829684 14838402 Dere07g0839 07 11884539 11890109 CCT