Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0816 ATGAGCACGAGATACCGTAGTCCGATACAGGTAGGTCCATTAGTTTCTTTTCTTCATATATTTCTTCTCCTTGAATTGATGTTTGTCTGAGTAGGAATTTTGTGGATGGATCCTACTCGAAAAGTTTGTGTGCTACTGATGCTTGTTGCACATGTGAATGCCTCTTTCTCAAAAAATGATTTTGGGCATTGTGAAAGAGCTGTTAGAAATTGGGCATACTCTTCACTTGATAAAGAAATCAGAGGGGATAAACACACACTGAAAGATTTGTTATTTTTCCTTCATGTCCCAAGAACAGGAGGACGCACATATTTTCACTGTTTCTTGAAGAAGTTATATCCTAGCTCTCTTGAATGCCCTCGTTCTTATGATAGGCTGCACTTTGATCCAAGCAAACCTAACTGCAGGCTGTTAGTTACGCATGATGACTATAGCATCACTTCAAAATTCCCAAGGGAGAGAACTTCTGTGGTTACCATACTTAGGGAACCAGTTAGTCGTGTCTTTAGTACATATGAATTTTCGATAGAGGTTGCAGCCAGATTTTTGGTGCATCCAAACTTGACATCTGCAACTCATATGGCTGCACTATTGCGCTCTAAGACTAAAGGAGTAAGCACACTAGATATCTGGCCCTGGAAGTATCTGGTTCTGTGGATGAGAAATGACCTATTTGCTAGGAGAGATCTGATGCAAAGTAATGGACTGCCATTCACTGAGAGTAGTGATTCCTATGACATGGAAGATTTTGCAATGCCATTACACGAATTCATCAATCATCCTGTGGCTGAGGATATTGTACATAATGGAGCCACATTCCAGGTTGCAGGTTTGACAAACAATTCTTATCAAGCAGAATCGCATGAAGTACGCCATTGTGTTCAGAAGTATAAGATTCTTGGTAAATATGTGCTACAAGTTGCAAAGAAGAGGTTAGATGATATGTTATATGTTGGTCTTACTGAGGAGCACAGAGAATCTGCCACAGTGTTTGCAAATGTGGTTGGTGCTCAGGTGATGTCACAGCTGAGAGCACCAAATACTGGCACGGGTGGTGTTAATAACATAGAACAGAGTCCACTTTCAAATTCTGAGCCTGATGACCATGAACATCAGATGACTGTGGGAGAGCTCATGGATGCTTATGAAGTCTGTATTTCTAGTTTATGGAAGGCCCAGGCTCAGCGACGCACTGCTTCTTTGAAGAGAATTTCTCCAGTGAACTTTTCAAAGGAGGCCCGCCTACAGGTTTCTGATGCAGTTCTCCAGCAGATTCGATCTCTTAATGACCTTGATTTAGAGCTCTATGAATATGCAAAAGAGCTTTTTTACAAGCAACAGAAACATACGTTGCAGAAATTTACTGAGGAAAGATGGGAAAATATGTCAAGCATTGCGAACTGGAAGGATACCAATAACATGAAGGATTCTTGGTTTTTTGACAAGAATTTTGATGGTCTATCGGATGAAATCTTTGATGATGTCATCAAATTTTTTGATTTCCCGCTGGAAGATGTGGAACCTGATGCTGCGGGTGAAGATTGGGATGCTCAATTCAAATGCCTTGAAGAGCCATCTTTTGATGTTTTATCAGTGTCGTCTTCTGGGCTGTGTAATAAAACTCAAAAAGGCAATCCAAAACTAGGGAGAATTTCTGCTTCTCATGCTGAGATCTCCCCAGTCGAAAATGTGCCAGAGACTACTAAACCGACTCATGTTAAAAGCATTCACAACCCGAATGTCTCTTCCAACAACAAAGATTTCCCCCAATTCCGAATCTATAGTCCAGTCTCTGTTTTTGAAAGCAGTAGCTCGTCAGGTGAGAATGCCTTGGATCAACCTTTCATCCCGAAGCGACCACGCAGCAAACGTCAACGTCTCTCAAGTTTCAGCTCTCTGTTCTCAGTTTCTTTCATCTCTTCTTCTCGAGCTTTGCAGAAATCTCAAAGGGTTGCTGCCTCTGAATCAGATTTTGAAGCACACCTTATTGGGAAATCATCATACATTCCCAAAAAGCAGAGGAAAAAGGATCTCTCTGCGCTCTCAGGCGATATCGAGATGAAGAGATCCTCATTGCAGGAGTCAATTGTCCCCAGAAAATGCATGCATTGTCAGGTGACTAAAACCCCCCAGTGGAGGGAGGGACCTAGGGGCCCAAAGACCCTATGTAATGCATGCGGGGTTCGATATCGGTCTGGCCGCCTCTTTCCTGAATACCGGCCTGCAGTCAGTCCTACTTTTGTAGCATCATTGCACTCTAACTGTCACAAGAAGGTCTTAGAGATGAGAAACAGAACCATCCGTGAAGCTGATAAGGGTTCTATGTTACCTTTGCCATCGAATTTTTCTGGATATTCACTTGGATAA 2367 0.4225 MSTRYRSPIQVGPLVSFLHIFLLLELMFVXVGILWMDPTRKVCVLLMLVAHVNASFSKNDFGHCERAVRNWAYSSLDKEIRGDKHTLKDLLFFLHVPRTGGRTYFHCFLKKLYPSSLECPRSYDRLHFDPSKPNCRLLVTHDDYSITSKFPRERTSVVTILREPVSRVFSTYEFSIEVAARFLVHPNLTSATHMAALLRSKTKGVSTLDIWPWKYLVLWMRNDLFARRDLMQSNGLPFTESSDSYDMEDFAMPLHEFINHPVAEDIVHNGATFQVAGLTNNSYQAESHEVRHCVQKYKILGKYVLQVAKKRLDDMLYVGLTEEHRESATVFANVVGAQVMSQLRAPNTGTGGVNNIEQSPLSNSEPDDHEHQMTVGELMDAYEVCISSLWKAQAQRRTASLKRISPVNFSKEARLQVSDAVLQQIRSLNDLDLELYEYAKELFYKQQKHTLQKFTEERWENMSSIANWKDTNNMKDSWFFDKNFDGLSDEIFDDVIKFFDFPLEDVEPDAAGEDWDAQFKCLEEPSFDVLSVSSSGLCNKTQKGNPKLGRISASHAEISPVENVPETTKPTHVKSIHNPNVSSNNKDFPQFRIYSPVSVFESSSSSGENALDQPFIPKRPRSKRQRLSSFSSLFSVSFISSSRALQKSQRVAASESDFEAHLIGKSSYIPKKQRKKDLSALSGDIEMKRSSLQESIVPRKCMHCQVTKTPQWREGPRGPKTLCNACGVRYRSGRLFPEYRPAVSPTFVASLHSNCHKKVLEMRNRTIREADKGSMLPLPSNFSGYSLG 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0816 788 Pfam GATA zinc finger 701 734 IPR000679 GO:0006355|GO:0043565
Dere07g0816 788 Gene3D - 697 745 IPR013088 GO:0006355|GO:0008270
Dere07g0816 788 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 694 756 - -
Dere07g0816 788 FunFam GATA transcription factor 690 774 - -
Dere07g0816 788 MobiDBLite consensus disorder prediction 346 370 - -
Dere07g0816 788 SMART GATA_3 695 745 IPR000679 GO:0006355|GO:0043565
Dere07g0816 788 ProSiteProfiles GATA-type zinc finger domain profile. 699 731 IPR000679 GO:0006355|GO:0043565
Dere07g0816 788 PANTHER HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 26 460 IPR010635 GO:0008146|GO:0016020
Dere07g0816 788 MobiDBLite consensus disorder prediction 346 362 - -
Dere07g0816 788 ProSitePatterns GATA-type zinc finger domain. 701 726 IPR000679 GO:0006355|GO:0043565
Dere07g0816 788 CDD ZnF_GATA 700 747 IPR000679 GO:0006355|GO:0043565
Dere07g0816 788 Gene3D - 86 409 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0816 Dere-ChrDere07 11678476 11690804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0816 481 771 C2C2-Gata Transcription Factor Family AT1G08010 39.073 1.46e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere07g0816 GATA 2.3e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0816 07 11678476 11690804 Dere07g0816 07 11678476 11690804 ECH