Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0740 ATGGACATGGAAGCCCCGGGGGAGCTTGTCGGGTCCGCCACCTCTCATAACGATGCTTCTGCCACCCTCGTCGCCAAGGGCAAACGCACCAAACGACACCGTCCCTTCTCCTCCAATTCCACCTCCTCCTCTGCCTCTGCCGATGATCATGTGTCGTTTAATTCCTCCACCACAACCGCTTCTCAGAGCACAGAGGAAGAAGACGAAGAAGACATGGCTAATTGCTTGATTCTCTTGGCTCAAGGTGGTGCGGATGCGCCTACCAAGCAGGCTACCCCCAGCAAAATCAATTGCTTCTATGTTTATGAGTGCAAAACTTGTAACAGAACCTTCCCTTCCTTTCAAGCTTTAGGTGGGCACAGAGCAAGCCACAAGAAGCCCAGGGTTGACGAAAAGAAACCGCAACCACCACCGCCGGCGGTGGCAACACAAGTTACGAGTTTTGAGTTTGAAGAAGCAGGGGAGGCCCAATTCAAAAGCAACCCTCAAGTTTCTCTTCAATTACCGAGTAATAAGGCTCTCCATAGCAACAAGGCCAAAATTCATGAGTGTTCCATATGTGGGTCGGAGTTTACATCTGGCCAAGCGTTGGGTGGCCACATGAGGAGGCATAGAGCATCAGCGAACGCCTCCGCCGTGGAAGTCAAGCCTAGGAATGTTCTAGAATTGGATCTTAACTTGCCGGCGCCGGAGGACGATCTCCGGGATTCAAAGTTTCAGTTTTCGCCCGCGCAGAAGTCTCTGGTGCTGTCTGCTCCGGCTTTGGTGGATTGCCATTATTGA 783 0.5211 MDMEAPGELVGSATSHNDASATLVAKGKRTKRHRPFSSNSTSSSASADDHVSFNSSTTTASQSTEEEDEEDMANCLILLAQGGADAPTKQATPSKINCFYVYECKTCNRTFPSFQALGGHRASHKKPRVDEKKPQPPPPAVATQVTSFEFEEAGEAQFKSNPQVSLQLPSNKALHSNKAKIHECSICGSEFTSGQALGGHMRRHRASANASAVEVKPRNVLELDLNLPAPEDDLRDSKFQFSPAQKSLVLSAPALVDCHY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0740 260 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Dere07g0740 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Dere07g0740 260 Pfam C2H2-type zinc finger 182 206 - -
Dere07g0740 260 Pfam C2H2-type zinc finger 101 127 - -
Dere07g0740 260 SUPERFAMILY beta-beta-alpha zinc fingers 101 204 IPR036236 -
Dere07g0740 260 PANTHER ZINC FINGER PROTEIN ZAT5 34 245 - -
Dere07g0740 260 MobiDBLite consensus disorder prediction 36 62 - -
Dere07g0740 260 MobiDBLite consensus disorder prediction 1 71 - -
Dere07g0740 260 SMART c2h2final6 102 124 IPR013087 -
Dere07g0740 260 SMART c2h2final6 182 204 IPR013087 -
Dere07g0740 260 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Dere07g0740 260 Gene3D Classic Zinc Finger 100 204 - -
Dere07g0740 260 MobiDBLite consensus disorder prediction 118 141 - -
Dere07g0740 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0740 Dere-ChrDere07 10804503 10805285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0740 22 260 C2H2 Transcription Factor Family AT2G28200 44.755 2.56e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere07g0740 zf-C2H2_6 1.7e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1014 08 14091290 14092282 Dere07g0740 07 10804503 10805285 CCT
Dere08g1014 08 14091290 14092282 Dere07g0740 07 10804503 10805285 ECH
Dere07g0740 07 10804503 10805285 Dere07g0740 07 10804503 10805285 ECH